==1590870== Memcheck, a memory error detector ==1590870== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1590870== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1590870== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCheckpointing -malloc_debug -malloc_dump -memory_info ==1590870== Parent PID: 1572417 ==1590870== ==1590870== ==1590870== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1590870== Open file descriptor 12: ==1590870== at 0xA79522D: pipe (pipe.c:29) ==1590870== by 0x142F807D: ??? ==1590870== by 0xFAFC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1590870== by 0xBE8D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1590870== by 0xBE26D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1590870== by 0xAB1DD38: PetscInitialize (pinit.c:924) ==1590870== by 0xA08115B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1590870== by 0xA0811A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1590870== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1590870== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1590870== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1590870== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1590870== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1590870== by 0x11CCF5: main (TestCheckpointing.cpp:18) ==1590870== ==1590870== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1590870== at 0xA799BCC: __open_nocancel (open64_nocancel.c:39) ==1590870== by 0xA71DC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1590870== by 0xA0B6822: ??? ==1590870== by 0xA0B696F: ??? ==1590870== by 0xFBA16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1590870== by 0xFBA1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1590870== by 0xFB57922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1590870== by 0xFAFC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1590870== by 0xBE8D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1590870== by 0xBE26D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1590870== by 0xAB1DD38: PetscInitialize (pinit.c:924) ==1590870== by 0xA08115B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1590870== by 0xA0811A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1590870== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1590870== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1590870== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1590870== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1590870== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1590870== by 0x11CCF5: main (TestCheckpointing.cpp:18) ==1590870== ==1590870== Open file descriptor 116: ==1590870== ==1590870== ==1590870== Open file descriptor 112: ==1590870== ==1590870== ==1590870== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCheckpointing_valgrind.txt ==1590870== ==1590870== ==1590870== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1590870== ==1590870== ==1590870== ==1590870== HEAP SUMMARY: ==1590870== in use at exit: 707,495 bytes in 9,499 blocks ==1590870== total heap usage: 836,631 allocs, 827,132 frees, 1,458,410,145 bytes allocated ==1590870== ==1590870== 448 bytes in 8 blocks are definitely lost in loss record 55 of 83 ==1590870== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1590870== by 0x922D975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==1590870== by 0x922BC0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==1590870== by 0x922EBB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==1590870== by 0x922EBD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==1590870== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1590870== by 0x4006567: call_init (dl-init.c:33) ==1590870== by 0x4006567: _dl_init (dl-init.c:117) ==1590870== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1590870== by 0x3: ??? ==1590870== by 0x1FFF000302: ??? ==1590870== by 0x1FFF000367: ??? ==1590870== by 0x1FFF000375: ??? ==1590870== by 0x1FFF000382: ??? ==1590870== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1590870== LEAK SUMMARY: ==1590870== definitely lost: 448 bytes in 8 blocks ==1590870== indirectly lost: 0 bytes in 0 blocks ==1590870== possibly lost: 0 bytes in 0 blocks ==1590870== still reachable: 5,848 bytes in 106 blocks ==1590870== suppressed: 701,199 bytes in 9,385 blocks ==1590870== Reachable blocks (those to which a pointer was found) are not shown. ==1590870== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1590870== ==1590870== For lists of detected and suppressed errors, rerun with: -s ==1590870== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 64 from 38)