==1588288== Memcheck, a memory error detector ==1588288== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1588288== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1588288== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation1d -malloc_debug -malloc_dump -memory_info ==1588288== Parent PID: 1572417 ==1588288== ==1588288== ==1588288== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1588288== Open file descriptor 12: ==1588288== at 0x1267122D: pipe (pipe.c:29) ==1588288== by 0x1B42F07D: ??? ==1588288== by 0x165934CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1588288== by 0x11F7B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1588288== by 0x11F14D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1588288== by 0x10C0BD38: PetscInitialize (pinit.c:924) ==1588288== by 0x10A8015B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1588288== by 0x10A801A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1588288== by 0x2254EB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1588288== by 0x21CBB7: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1588288== by 0x220694: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1588288== by 0x22058F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1588288== by 0x220BA3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1588288== by 0x21B375: main (TestCryptSimulation1d.cpp:18) ==1588288== ==1588288== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1588288== at 0x12675BCC: __open_nocancel (open64_nocancel.c:39) ==1588288== by 0x125F9C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1588288== by 0x10AB5822: ??? ==1588288== by 0x10AB596F: ??? ==1588288== by 0x166386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1588288== by 0x16638938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1588288== by 0x165EE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1588288== by 0x165932DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1588288== by 0x11F7B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1588288== by 0x11F14D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1588288== by 0x10C0BD38: PetscInitialize (pinit.c:924) ==1588288== by 0x10A8015B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1588288== by 0x10A801A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1588288== by 0x2254EB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1588288== by 0x21CBB7: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1588288== by 0x220694: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1588288== by 0x22058F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1588288== by 0x220BA3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1588288== by 0x21B375: main (TestCryptSimulation1d.cpp:18) ==1588288== ==1588288== Open file descriptor 116: ==1588288== ==1588288== ==1588288== Open file descriptor 112: ==1588288== ==1588288== ==1588288== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation1d_valgrind.txt ==1588288== ==1588288== ==1588288== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1588288== ==1588288== ==1588288== ==1588288== HEAP SUMMARY: ==1588288== in use at exit: 706,976 bytes in 9,486 blocks ==1588288== total heap usage: 4,116,613 allocs, 4,107,127 frees, 1,993,168,144 bytes allocated ==1588288== ==1588288== 448 bytes in 8 blocks are definitely lost in loss record 48 of 76 ==1588288== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1588288== by 0xFC9F975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==1588288== by 0xFC9DC0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==1588288== by 0xFCA0BB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==1588288== by 0xFCA0BD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==1588288== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1588288== by 0x4006567: call_init (dl-init.c:33) ==1588288== by 0x4006567: _dl_init (dl-init.c:117) ==1588288== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1588288== by 0x3: ??? ==1588288== by 0x1FFF0002FA: ??? ==1588288== by 0x1FFF000363: ??? ==1588288== by 0x1FFF000371: ??? ==1588288== by 0x1FFF00037E: ??? ==1588288== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1588288== LEAK SUMMARY: ==1588288== definitely lost: 448 bytes in 8 blocks ==1588288== indirectly lost: 0 bytes in 0 blocks ==1588288== possibly lost: 0 bytes in 0 blocks ==1588288== still reachable: 5,880 bytes in 107 blocks ==1588288== suppressed: 700,648 bytes in 9,371 blocks ==1588288== Reachable blocks (those to which a pointer was found) are not shown. ==1588288== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1588288== ==1588288== For lists of detected and suppressed errors, rerun with: -s ==1588288== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 33 from 33)