==1588321== Memcheck, a memory error detector ==1588321== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1588321== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1588321== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==1588321== Parent PID: 1572417 ==1588321== ==1588321== ==1588321== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1588321== Open file descriptor 12: ==1588321== at 0x1267122D: pipe (pipe.c:29) ==1588321== by 0x1B42F07D: ??? ==1588321== by 0x165934CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1588321== by 0x11F7B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1588321== by 0x11F14D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1588321== by 0x10C0BD38: PetscInitialize (pinit.c:924) ==1588321== by 0x10A8015B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1588321== by 0x10A801A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1588321== by 0x2247F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1588321== by 0x21BFC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1588321== by 0x21FBD0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1588321== by 0x21FA70: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1588321== by 0x220107: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1588321== by 0x21A2B5: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==1588321== ==1588321== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1588321== at 0x12675BCC: __open_nocancel (open64_nocancel.c:39) ==1588321== by 0x125F9C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1588321== by 0x10AB5822: ??? ==1588321== by 0x10AB596F: ??? ==1588321== by 0x166386DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1588321== by 0x16638938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1588321== by 0x165EE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1588321== by 0x165932DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1588321== by 0x11F7B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1588321== by 0x11F14D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1588321== by 0x10C0BD38: PetscInitialize (pinit.c:924) ==1588321== by 0x10A8015B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1588321== by 0x10A801A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1588321== by 0x2247F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1588321== by 0x21BFC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1588321== by 0x21FBD0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1588321== by 0x21FA70: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1588321== by 0x220107: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1588321== by 0x21A2B5: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==1588321== ==1588321== Open file descriptor 116: ==1588321== ==1588321== ==1588321== Open file descriptor 112: ==1588321== ==1588321== ==1588321== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==1588321== ==1588321== ==1588321== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1588321== ==1588321== ==1588321== ==1588321== HEAP SUMMARY: ==1588321== in use at exit: 706,976 bytes in 9,486 blocks ==1588321== total heap usage: 3,715,756 allocs, 3,706,270 frees, 1,635,877,534 bytes allocated ==1588321== ==1588321== 448 bytes in 8 blocks are definitely lost in loss record 48 of 76 ==1588321== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1588321== by 0xFC9F975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==1588321== by 0xFC9DC0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==1588321== by 0xFCA0BB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==1588321== by 0xFCA0BD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==1588321== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1588321== by 0x4006567: call_init (dl-init.c:33) ==1588321== by 0x4006567: _dl_init (dl-init.c:117) ==1588321== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1588321== by 0x3: ??? ==1588321== by 0x1FFF0002C2: ??? ==1588321== by 0x1FFF000348: ??? ==1588321== by 0x1FFF000356: ??? ==1588321== by 0x1FFF000363: ??? ==1588321== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1588321== LEAK SUMMARY: ==1588321== definitely lost: 448 bytes in 8 blocks ==1588321== indirectly lost: 0 bytes in 0 blocks ==1588321== possibly lost: 0 bytes in 0 blocks ==1588321== still reachable: 5,880 bytes in 107 blocks ==1588321== suppressed: 700,648 bytes in 9,371 blocks ==1588321== Reachable blocks (those to which a pointer was found) are not shown. ==1588321== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1588321== ==1588321== For lists of detected and suppressed errors, rerun with: -s ==1588321== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 33 from 33)