==1572959== Memcheck, a memory error detector ==1572959== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1572959== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1572959== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestFemlabMeshReader -malloc_debug -malloc_dump -memory_info ==1572959== Parent PID: 1572417 ==1572959== ==1572959== ==1572959== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1572959== Open file descriptor 12: ==1572959== at 0x68DC22D: pipe (pipe.c:29) ==1572959== by 0x1009307D: ??? ==1572959== by 0xB9D94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1572959== by 0x7F27418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1572959== by 0x7EC0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1572959== by 0x6BB5D38: PetscInitialize (pinit.c:924) ==1572959== by 0x652715B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1572959== by 0x65271A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1572959== by 0x116E94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1572959== by 0x112485: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1572959== by 0x114ED6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1572959== by 0x114D76: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1572959== by 0x11540D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1572959== by 0x1107B5: main (TestFemlabMeshReader.cpp:19) ==1572959== ==1572959== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1572959== at 0x68E0BCC: __open_nocancel (open64_nocancel.c:39) ==1572959== by 0x6864C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1572959== by 0x655C822: ??? ==1572959== by 0x655C96F: ??? ==1572959== by 0xBA7E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1572959== by 0xBA7E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1572959== by 0xBA34922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1572959== by 0xB9D92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1572959== by 0x7F27418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1572959== by 0x7EC0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1572959== by 0x6BB5D38: PetscInitialize (pinit.c:924) ==1572959== by 0x652715B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1572959== by 0x65271A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1572959== by 0x116E94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1572959== by 0x112485: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1572959== by 0x114ED6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1572959== by 0x114D76: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1572959== by 0x11540D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1572959== by 0x1107B5: main (TestFemlabMeshReader.cpp:19) ==1572959== ==1572959== Open file descriptor 116: ==1572959== ==1572959== ==1572959== Open file descriptor 112: ==1572959== ==1572959== ==1572959== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFemlabMeshReader_valgrind.txt ==1572959== ==1572959== ==1572959== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1572959== ==1572959== ==1572959== ==1572959== HEAP SUMMARY: ==1572959== in use at exit: 706,903 bytes in 9,489 blocks ==1572959== total heap usage: 70,797 allocs, 61,308 frees, 1,354,920,412 bytes allocated ==1572959== ==1572959== 448 bytes in 8 blocks are definitely lost in loss record 52 of 80 ==1572959== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1572959== by 0x5746975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==1572959== by 0x5744C0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==1572959== by 0x5747BB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==1572959== by 0x5747BD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==1572959== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1572959== by 0x4006567: call_init (dl-init.c:33) ==1572959== by 0x4006567: _dl_init (dl-init.c:117) ==1572959== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1572959== by 0x3: ??? ==1572959== by 0x1FFF0002FE: ??? ==1572959== by 0x1FFF000365: ??? ==1572959== by 0x1FFF000373: ??? ==1572959== by 0x1FFF000380: ??? ==1572959== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1572959== LEAK SUMMARY: ==1572959== definitely lost: 448 bytes in 8 blocks ==1572959== indirectly lost: 0 bytes in 0 blocks ==1572959== possibly lost: 0 bytes in 0 blocks ==1572959== still reachable: 5,848 bytes in 106 blocks ==1572959== suppressed: 700,607 bytes in 9,375 blocks ==1572959== Reachable blocks (those to which a pointer was found) are not shown. ==1572959== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1572959== ==1572959== For lists of detected and suppressed errors, rerun with: -s ==1572959== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 37 from 37)