==1588046== Memcheck, a memory error detector ==1588046== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1588046== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1588046== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1588046== Parent PID: 1572417 ==1588046== ==1588046== ==1588046== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1588046== Open file descriptor 12: ==1588046== at 0x10E5622D: pipe (pipe.c:29) ==1588046== by 0x1976D07D: ??? ==1588046== by 0x14CD24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1588046== by 0x10679418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1588046== by 0x10612D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1588046== by 0xF2E9D38: PetscInitialize (pinit.c:924) ==1588046== by 0xF1C015B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1588046== by 0xF1C01A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1588046== by 0x1299FD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1588046== by 0x124BA5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1588046== by 0x127222: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1588046== by 0x1270C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1588046== by 0x127759: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1588046== by 0x122ED5: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==1588046== ==1588046== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1588046== at 0x10E5ABCC: __open_nocancel (open64_nocancel.c:39) ==1588046== by 0x10DDEC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1588046== by 0x10573822: ??? ==1588046== by 0x1057396F: ??? ==1588046== by 0x14D776DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1588046== by 0x14D77938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1588046== by 0x14D2D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1588046== by 0x14CD22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1588046== by 0x10679418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1588046== by 0x10612D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1588046== by 0xF2E9D38: PetscInitialize (pinit.c:924) ==1588046== by 0xF1C015B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1588046== by 0xF1C01A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1588046== by 0x1299FD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1588046== by 0x124BA5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1588046== by 0x127222: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1588046== by 0x1270C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1588046== by 0x127759: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1588046== by 0x122ED5: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==1588046== ==1588046== Open file descriptor 116: ==1588046== ==1588046== ==1588046== Open file descriptor 112: ==1588046== ==1588046== ==1588046== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==1588046== ==1588046== ==1588046== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1588046== ==1588046== ==1588046== ==1588046== HEAP SUMMARY: ==1588046== in use at exit: 707,031 bytes in 9,490 blocks ==1588046== total heap usage: 1,401,163 allocs, 1,391,673 frees, 1,413,552,950 bytes allocated ==1588046== ==1588046== 448 bytes in 8 blocks are definitely lost in loss record 52 of 80 ==1588046== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1588046== by 0xE3DD975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==1588046== by 0xE3DBC0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==1588046== by 0xE3DEBB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==1588046== by 0xE3DEBD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==1588046== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1588046== by 0x4006567: call_init (dl-init.c:33) ==1588046== by 0x4006567: _dl_init (dl-init.c:117) ==1588046== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1588046== by 0x3: ??? ==1588046== by 0x1FFF0002CA: ??? ==1588046== by 0x1FFF00034C: ??? ==1588046== by 0x1FFF00035A: ??? ==1588046== by 0x1FFF000367: ??? ==1588046== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1588046== LEAK SUMMARY: ==1588046== definitely lost: 448 bytes in 8 blocks ==1588046== indirectly lost: 0 bytes in 0 blocks ==1588046== possibly lost: 0 bytes in 0 blocks ==1588046== still reachable: 5,880 bytes in 107 blocks ==1588046== suppressed: 700,703 bytes in 9,375 blocks ==1588046== Reachable blocks (those to which a pointer was found) are not shown. ==1588046== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1588046== ==1588046== For lists of detected and suppressed errors, rerun with: -s ==1588046== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 40 from 40)