==1573741== Memcheck, a memory error detector ==1573741== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1573741== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1573741== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimpleCellCycleModels -malloc_debug -malloc_dump -memory_info ==1573741== Parent PID: 1572417 ==1573741== ==1573741== ==1573741== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1573741== Open file descriptor 12: ==1573741== at 0xEE3D22D: pipe (pipe.c:29) ==1573741== by 0x1976D07D: ??? ==1573741== by 0x13CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1573741== by 0xEA8E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1573741== by 0xEA27D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1573741== by 0xD71ED38: PetscInitialize (pinit.c:924) ==1573741== by 0xD59115B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1573741== by 0xD5911A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1573741== by 0x138D19: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1573741== by 0x131497: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1573741== by 0x134564: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1573741== by 0x134404: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1573741== by 0x134A9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1573741== by 0x12D2C5: main (TestSimpleCellCycleModels.cpp:19) ==1573741== ==1573741== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1573741== at 0xEE41BCC: __open_nocancel (open64_nocancel.c:39) ==1573741== by 0xEDC5C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1573741== by 0xD5C6822: ??? ==1573741== by 0xD5C696F: ??? ==1573741== by 0x13D636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1573741== by 0x13D63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1573741== by 0x13D19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1573741== by 0x13CBE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1573741== by 0xEA8E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1573741== by 0xEA27D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1573741== by 0xD71ED38: PetscInitialize (pinit.c:924) ==1573741== by 0xD59115B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1573741== by 0xD5911A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1573741== by 0x138D19: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1573741== by 0x131497: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1573741== by 0x134564: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1573741== by 0x134404: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1573741== by 0x134A9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1573741== by 0x12D2C5: main (TestSimpleCellCycleModels.cpp:19) ==1573741== ==1573741== Open file descriptor 116: ==1573741== ==1573741== ==1573741== Open file descriptor 112: ==1573741== ==1573741== ==1573741== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModels_valgrind.txt ==1573741== ==1573741== ==1573741== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1573741== ==1573741== ==1573741== ==1573741== HEAP SUMMARY: ==1573741== in use at exit: 707,063 bytes in 9,491 blocks ==1573741== total heap usage: 81,288 allocs, 71,797 frees, 1,357,358,150 bytes allocated ==1573741== ==1573741== 448 bytes in 8 blocks are definitely lost in loss record 53 of 81 ==1573741== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1573741== by 0x1041C975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==1573741== by 0x1041AC0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==1573741== by 0x1041DBB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==1573741== by 0x1041DBD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==1573741== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1573741== by 0x4006567: call_init (dl-init.c:33) ==1573741== by 0x4006567: _dl_init (dl-init.c:117) ==1573741== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1573741== by 0x3: ??? ==1573741== by 0x1FFF0002EA: ??? ==1573741== by 0x1FFF00035C: ??? ==1573741== by 0x1FFF00036A: ??? ==1573741== by 0x1FFF000377: ??? ==1573741== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1573741== LEAK SUMMARY: ==1573741== definitely lost: 448 bytes in 8 blocks ==1573741== indirectly lost: 0 bytes in 0 blocks ==1573741== possibly lost: 0 bytes in 0 blocks ==1573741== still reachable: 5,912 bytes in 108 blocks ==1573741== suppressed: 700,703 bytes in 9,375 blocks ==1573741== Reachable blocks (those to which a pointer was found) are not shown. ==1573741== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1573741== ==1573741== For lists of detected and suppressed errors, rerun with: -s ==1573741== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 37 from 37)