==1633673== Memcheck, a memory error detector ==1633673== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1633673== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1633673== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayRemesher -malloc_debug -malloc_dump -memory_info ==1633673== Parent PID: 1617327 ==1633673== ==1633673== ==1633673== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1633673== Open file descriptor 12: ==1633673== at 0x81F622D: pipe (pipe.c:29) ==1633673== by 0x1077307D: ??? ==1633673== by 0xBF9B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1633673== by 0x7B00418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1633673== by 0x7A99D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1633673== by 0x6770D38: PetscInitialize (pinit.c:924) ==1633673== by 0x664715B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1633673== by 0x66471A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1633673== by 0x11A567: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1633673== by 0x116153: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1633673== by 0x1185EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1633673== by 0x1184E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1633673== by 0x118AFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1633673== by 0x114955: main (TestAirwayRemesher.cpp:18) ==1633673== ==1633673== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1633673== at 0x81FABCC: __open_nocancel (open64_nocancel.c:39) ==1633673== by 0x817EC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1633673== by 0x79FA822: ??? ==1633673== by 0x79FA96F: ??? ==1633673== by 0xC0406DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1633673== by 0xC040938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1633673== by 0xBFF6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1633673== by 0xBF9B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1633673== by 0x7B00418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1633673== by 0x7A99D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1633673== by 0x6770D38: PetscInitialize (pinit.c:924) ==1633673== by 0x664715B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1633673== by 0x66471A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1633673== by 0x11A567: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1633673== by 0x116153: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1633673== by 0x1185EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1633673== by 0x1184E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1633673== by 0x118AFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1633673== by 0x114955: main (TestAirwayRemesher.cpp:18) ==1633673== ==1633673== Open file descriptor 116: ==1633673== ==1633673== ==1633673== Open file descriptor 112: ==1633673== ==1633673== ==1633673== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayRemesher_valgrind.txt ==1633673== ==1633673== ==1633673== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1633673== ==1633673== ==1633673== ==1633673== HEAP SUMMARY: ==1633673== in use at exit: 706,928 bytes in 9,485 blocks ==1633673== total heap usage: 11,599,356 allocs, 11,589,871 frees, 1,812,603,506 bytes allocated ==1633673== ==1633673== 448 bytes in 8 blocks are definitely lost in loss record 47 of 75 ==1633673== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1633673== by 0x5864975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==1633673== by 0x5862C0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==1633673== by 0x5865BB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==1633673== by 0x5865BD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==1633673== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1633673== by 0x4006567: call_init (dl-init.c:33) ==1633673== by 0x4006567: _dl_init (dl-init.c:117) ==1633673== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1633673== by 0x3: ??? ==1633673== by 0x1FFF000302: ??? ==1633673== by 0x1FFF000367: ??? ==1633673== by 0x1FFF000375: ??? ==1633673== by 0x1FFF000382: ??? ==1633673== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1633673== LEAK SUMMARY: ==1633673== definitely lost: 448 bytes in 8 blocks ==1633673== indirectly lost: 0 bytes in 0 blocks ==1633673== possibly lost: 0 bytes in 0 blocks ==1633673== still reachable: 5,848 bytes in 106 blocks ==1633673== suppressed: 700,632 bytes in 9,371 blocks ==1633673== Reachable blocks (those to which a pointer was found) are not shown. ==1633673== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1633673== ==1633673== For lists of detected and suppressed errors, rerun with: -s ==1633673== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 33 from 33)