==1618953== Memcheck, a memory error detector ==1618953== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1618953== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1618953== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==1618953== Parent PID: 1617327 ==1618953== ==1618953== ==1618953== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1618953== Open file descriptor 12: ==1618953== at 0xF07E22D: pipe (pipe.c:29) ==1618953== by 0x1976907D: ??? ==1618953== by 0x13D0B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1618953== by 0xECCD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1618953== by 0xEC66D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1618953== by 0xD95DD38: PetscInitialize (pinit.c:924) ==1618953== by 0xD7D215B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1618953== by 0xD7D21A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1618953== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1618953== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1618953== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1618953== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1618953== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1618953== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==1618953== ==1618953== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1618953== at 0xF082BCC: __open_nocancel (open64_nocancel.c:39) ==1618953== by 0xF006C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1618953== by 0xD807822: ??? ==1618953== by 0xD80796F: ??? ==1618953== by 0x13DB06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1618953== by 0x13DB0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1618953== by 0x13D66922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1618953== by 0x13D0B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1618953== by 0xECCD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1618953== by 0xEC66D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1618953== by 0xD95DD38: PetscInitialize (pinit.c:924) ==1618953== by 0xD7D215B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1618953== by 0xD7D21A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1618953== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1618953== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1618953== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1618953== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1618953== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1618953== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==1618953== ==1618953== Open file descriptor 116: ==1618953== ==1618953== ==1618953== Open file descriptor 112: ==1618953== ==1618953== ==1618953== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==1618953== ==1618953== ==1618953== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1618953== ==1618953== ==1618953== ==1618953== HEAP SUMMARY: ==1618953== in use at exit: 706,999 bytes in 9,489 blocks ==1618953== total heap usage: 168,448 allocs, 158,959 frees, 1,364,724,601 bytes allocated ==1618953== ==1618953== 448 bytes in 8 blocks are definitely lost in loss record 51 of 79 ==1618953== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1618953== by 0x10418975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==1618953== by 0x10416C0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==1618953== by 0x10419BB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==1618953== by 0x10419BD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==1618953== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1618953== by 0x4006567: call_init (dl-init.c:33) ==1618953== by 0x4006567: _dl_init (dl-init.c:117) ==1618953== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1618953== by 0x3: ??? ==1618953== by 0x1FFF0002C2: ??? ==1618953== by 0x1FFF000347: ??? ==1618953== by 0x1FFF000355: ??? ==1618953== by 0x1FFF000362: ??? ==1618953== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1618953== LEAK SUMMARY: ==1618953== definitely lost: 448 bytes in 8 blocks ==1618953== indirectly lost: 0 bytes in 0 blocks ==1618953== possibly lost: 0 bytes in 0 blocks ==1618953== still reachable: 5,848 bytes in 106 blocks ==1618953== suppressed: 700,703 bytes in 9,375 blocks ==1618953== Reachable blocks (those to which a pointer was found) are not shown. ==1618953== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1618953== ==1618953== For lists of detected and suppressed errors, rerun with: -s ==1618953== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 37 from 37)