==1618557== Memcheck, a memory error detector ==1618557== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1618557== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1618557== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCell -malloc_debug -malloc_dump -memory_info ==1618557== Parent PID: 1617327 ==1618557== ==1618557== ==1618557== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1618557== Open file descriptor 12: ==1618557== at 0xEDF722D: pipe (pipe.c:29) ==1618557== by 0x1976907D: ??? ==1618557== by 0x13CBA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1618557== by 0xEA48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1618557== by 0xE9E1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1618557== by 0xD6B8D38: PetscInitialize (pinit.c:924) ==1618557== by 0xD58D15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1618557== by 0xD58D1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1618557== by 0x1292D3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1618557== by 0x123FC5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1618557== by 0x126EA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1618557== by 0x126D42: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1618557== by 0x1273D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1618557== by 0x1222F5: main (TestCell.cpp:19) ==1618557== ==1618557== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1618557== at 0xEDFBBCC: __open_nocancel (open64_nocancel.c:39) ==1618557== by 0xED7FC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1618557== by 0xE942822: ??? ==1618557== by 0xE94296F: ??? ==1618557== by 0x13D5F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1618557== by 0x13D5F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1618557== by 0x13D15922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1618557== by 0x13CBA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1618557== by 0xEA48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1618557== by 0xE9E1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1618557== by 0xD6B8D38: PetscInitialize (pinit.c:924) ==1618557== by 0xD58D15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1618557== by 0xD58D1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1618557== by 0x1292D3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1618557== by 0x123FC5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1618557== by 0x126EA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1618557== by 0x126D42: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1618557== by 0x1273D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1618557== by 0x1222F5: main (TestCell.cpp:19) ==1618557== ==1618557== Open file descriptor 116: ==1618557== ==1618557== ==1618557== Open file descriptor 112: ==1618557== ==1618557== ==1618557== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCell_valgrind.txt ==1618557== ==1618557== ==1618557== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1618557== ==1618557== ==1618557== ==1618557== HEAP SUMMARY: ==1618557== in use at exit: 707,088 bytes in 9,487 blocks ==1618557== total heap usage: 5,185,853 allocs, 5,176,366 frees, 1,834,274,519 bytes allocated ==1618557== ==1618557== 448 bytes in 8 blocks are definitely lost in loss record 49 of 77 ==1618557== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1618557== by 0x103D6975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==1618557== by 0x103D4C0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==1618557== by 0x103D7BB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==1618557== by 0x103D7BD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==1618557== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1618557== by 0x4006567: call_init (dl-init.c:33) ==1618557== by 0x4006567: _dl_init (dl-init.c:117) ==1618557== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1618557== by 0x3: ??? ==1618557== by 0x1FFF00030A: ??? ==1618557== by 0x1FFF00036B: ??? ==1618557== by 0x1FFF000379: ??? ==1618557== by 0x1FFF000386: ??? ==1618557== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1618557== LEAK SUMMARY: ==1618557== definitely lost: 448 bytes in 8 blocks ==1618557== indirectly lost: 0 bytes in 0 blocks ==1618557== possibly lost: 0 bytes in 0 blocks ==1618557== still reachable: 6,008 bytes in 108 blocks ==1618557== suppressed: 700,632 bytes in 9,371 blocks ==1618557== Reachable blocks (those to which a pointer was found) are not shown. ==1618557== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1618557== ==1618557== For lists of detected and suppressed errors, rerun with: -s ==1618557== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 33 from 33)