==1618069== Memcheck, a memory error detector ==1618069== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1618069== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1618069== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryElement -malloc_debug -malloc_dump -memory_info ==1618069== Parent PID: 1617327 ==1618069== ==1618069== ==1618069== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1618069== Open file descriptor 12: ==1618069== at 0x7D9122D: pipe (pipe.c:29) ==1618069== by 0x1009307D: ??? ==1618069== by 0xB9D94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1618069== by 0x79E2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1618069== by 0x797BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1618069== by 0x6650D38: PetscInitialize (pinit.c:924) ==1618069== by 0x652715B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1618069== by 0x65271A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1618069== by 0x116AF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1618069== by 0x112565: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1618069== by 0x114B42: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1618069== by 0x1149E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1618069== by 0x115079: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1618069== by 0x110895: main (TestImmersedBoundaryElement.cpp:19) ==1618069== ==1618069== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1618069== at 0x7D95BCC: __open_nocancel (open64_nocancel.c:39) ==1618069== by 0x7D19C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1618069== by 0x78DA822: ??? ==1618069== by 0x78DA96F: ??? ==1618069== by 0xBA7E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1618069== by 0xBA7E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1618069== by 0xBA34922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1618069== by 0xB9D92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1618069== by 0x79E2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1618069== by 0x797BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1618069== by 0x6650D38: PetscInitialize (pinit.c:924) ==1618069== by 0x652715B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1618069== by 0x65271A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1618069== by 0x116AF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1618069== by 0x112565: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1618069== by 0x114B42: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1618069== by 0x1149E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1618069== by 0x115079: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1618069== by 0x110895: main (TestImmersedBoundaryElement.cpp:19) ==1618069== ==1618069== Open file descriptor 116: ==1618069== ==1618069== ==1618069== Open file descriptor 112: ==1618069== ==1618069== ==1618069== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryElement_valgrind.txt ==1618069== ==1618069== ==1618069== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1618069== ==1618069== ==1618069== ==1618069== HEAP SUMMARY: ==1618069== in use at exit: 707,175 bytes in 9,491 blocks ==1618069== total heap usage: 49,637 allocs, 40,146 frees, 1,353,465,681 bytes allocated ==1618069== ==1618069== 136 bytes in 1 blocks are definitely lost in loss record 36 of 82 ==1618069== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1618069== by 0x117E5C: TestImmersedBoundaryElement::Test1DMethods() (TestImmersedBoundaryElement.hpp:93) ==1618069== by 0x118820: TestDescription_TestImmersedBoundaryElement_Test1DMethods::runTest() (TestImmersedBoundaryElement.cpp:37) ==1618069== by 0x111B60: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==1618069== by 0x114DF0: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==1618069== by 0x114CD5: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==1618069== by 0x114B7B: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==1618069== by 0x1149E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1618069== by 0x115079: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1618069== by 0x110895: main (TestImmersedBoundaryElement.cpp:19) ==1618069== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN27TestImmersedBoundaryElement13Test1DMethodsEv fun:_ZN57TestDescription_TestImmersedBoundaryElement_Test1DMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==1618069== 136 bytes in 1 blocks are definitely lost in loss record 37 of 82 ==1618069== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1618069== by 0x117EAF: TestImmersedBoundaryElement::Test1DMethods() (TestImmersedBoundaryElement.hpp:94) ==1618069== by 0x118820: TestDescription_TestImmersedBoundaryElement_Test1DMethods::runTest() (TestImmersedBoundaryElement.cpp:37) ==1618069== by 0x111B60: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==1618069== by 0x114DF0: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==1618069== by 0x114CD5: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==1618069== by 0x114B7B: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==1618069== by 0x1149E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1618069== by 0x115079: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1618069== by 0x110895: main (TestImmersedBoundaryElement.cpp:19) ==1618069== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN27TestImmersedBoundaryElement13Test1DMethodsEv fun:_ZN57TestDescription_TestImmersedBoundaryElement_Test1DMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==1618069== 448 bytes in 8 blocks are definitely lost in loss record 54 of 82 ==1618069== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1618069== by 0x5746975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==1618069== by 0x5744C0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==1618069== by 0x5747BB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==1618069== by 0x5747BD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==1618069== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1618069== by 0x4006567: call_init (dl-init.c:33) ==1618069== by 0x4006567: _dl_init (dl-init.c:117) ==1618069== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1618069== by 0x3: ??? ==1618069== by 0x1FFF0002F2: ??? ==1618069== by 0x1FFF000360: ??? ==1618069== by 0x1FFF00036E: ??? ==1618069== by 0x1FFF00037B: ??? ==1618069== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1618069== LEAK SUMMARY: ==1618069== definitely lost: 720 bytes in 10 blocks ==1618069== indirectly lost: 0 bytes in 0 blocks ==1618069== possibly lost: 0 bytes in 0 blocks ==1618069== still reachable: 5,848 bytes in 106 blocks ==1618069== suppressed: 700,607 bytes in 9,375 blocks ==1618069== Reachable blocks (those to which a pointer was found) are not shown. ==1618069== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1618069== ==1618069== For lists of detected and suppressed errors, rerun with: -s ==1618069== ERROR SUMMARY: 3 errors from 3 contexts (suppressed: 37 from 37)