==1618119== Memcheck, a memory error detector ==1618119== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1618119== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1618119== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryPalisadeMeshGenerator -malloc_debug -malloc_dump -memory_info ==1618119== Parent PID: 1617327 ==1618119== ==1618119== ==1618119== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1618119== Open file descriptor 12: ==1618119== at 0x80D622D: pipe (pipe.c:29) ==1618119== by 0x1009407D: ??? ==1618119== by 0xB9CB4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1618119== by 0x79E2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1618119== by 0x797BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1618119== by 0x6650D38: PetscInitialize (pinit.c:924) ==1618119== by 0x652715B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1618119== by 0x65271A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1618119== by 0x113C33: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1618119== by 0x10F4E5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1618119== by 0x111CB0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1618119== by 0x111B50: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1618119== by 0x1121E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1618119== by 0x10D815: main (TestImmersedBoundaryPalisadeMeshGenerator.cpp:19) ==1618119== ==1618119== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1618119== at 0x80DABCC: __open_nocancel (open64_nocancel.c:39) ==1618119== by 0x805EC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1618119== by 0x78DA822: ??? ==1618119== by 0x78DA96F: ??? ==1618119== by 0xBA706DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1618119== by 0xBA70938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1618119== by 0xBA26922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1618119== by 0xB9CB2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1618119== by 0x79E2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1618119== by 0x797BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1618119== by 0x6650D38: PetscInitialize (pinit.c:924) ==1618119== by 0x652715B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1618119== by 0x65271A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1618119== by 0x113C33: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1618119== by 0x10F4E5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1618119== by 0x111CB0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1618119== by 0x111B50: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1618119== by 0x1121E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1618119== by 0x10D815: main (TestImmersedBoundaryPalisadeMeshGenerator.cpp:19) ==1618119== ==1618119== Open file descriptor 116: ==1618119== ==1618119== ==1618119== Open file descriptor 112: ==1618119== ==1618119== ==1618119== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryPalisadeMeshGenerator_valgrind.txt ==1618119== ==1618119== ==1618119== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1618119== ==1618119== ==1618119== ==1618119== HEAP SUMMARY: ==1618119== in use at exit: 730,167 bytes in 9,658 blocks ==1618119== total heap usage: 57,772 allocs, 48,114 frees, 1,369,053,062 bytes allocated ==1618119== ==1618119== 448 bytes in 8 blocks are definitely lost in loss record 51 of 84 ==1618119== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1618119== by 0x5746975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==1618119== by 0x5744C0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==1618119== by 0x5747BB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==1618119== by 0x5747BD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==1618119== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1618119== by 0x4006567: call_init (dl-init.c:33) ==1618119== by 0x4006567: _dl_init (dl-init.c:117) ==1618119== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1618119== by 0x3: ??? ==1618119== by 0x1FFF0002D6: ??? ==1618119== by 0x1FFF000352: ??? ==1618119== by 0x1FFF000360: ??? ==1618119== by 0x1FFF00036D: ??? ==1618119== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1618119== 20,712 (128 direct, 20,584 indirect) bytes in 1 blocks are definitely lost in loss record 78 of 84 ==1618119== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1618119== by 0x5BABEF6: ImmersedBoundaryPalisadeMeshGenerator::ImmersedBoundaryPalisadeMeshGenerator(unsigned int, unsigned int, double, double, double, bool, bool, bool, unsigned int, double) (ImmersedBoundaryPalisadeMeshGenerator.cpp:222) ==1618119== by 0x1144A9: TestImmersedBoundaryPalisadeMeshGenerator::TestCellGenerationExceptions() (TestImmersedBoundaryPalisadeMeshGenerator.hpp:86) ==1618119== by 0x1146C2: TestDescription_TestImmersedBoundaryPalisadeMeshGenerator_TestCellGenerationExceptions::runTest() (TestImmersedBoundaryPalisadeMeshGenerator.cpp:43) ==1618119== by 0x10EAE0: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==1618119== by 0x111F5E: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==1618119== by 0x111E43: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==1618119== by 0x111CE9: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==1618119== by 0x111B50: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1618119== by 0x1121E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1618119== by 0x10D815: main (TestImmersedBoundaryPalisadeMeshGenerator.cpp:19) ==1618119== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN37ImmersedBoundaryPalisadeMeshGeneratorC1Ejjdddbbbjd fun:_ZN41TestImmersedBoundaryPalisadeMeshGenerator28TestCellGenerationExceptionsEv fun:_ZN86TestDescription_TestImmersedBoundaryPalisadeMeshGenerator_TestCellGenerationExceptions7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==1618119== LEAK SUMMARY: ==1618119== definitely lost: 576 bytes in 9 blocks ==1618119== indirectly lost: 20,584 bytes in 167 blocks ==1618119== possibly lost: 0 bytes in 0 blocks ==1618119== still reachable: 8,400 bytes in 107 blocks ==1618119== suppressed: 700,607 bytes in 9,375 blocks ==1618119== Reachable blocks (those to which a pointer was found) are not shown. ==1618119== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1618119== ==1618119== For lists of detected and suppressed errors, rerun with: -s ==1618119== ERROR SUMMARY: 2 errors from 2 contexts (suppressed: 37 from 37)