==1632978== Memcheck, a memory error detector ==1632978== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1632978== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1632978== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOdeBasedCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==1632978== Parent PID: 1617327 ==1632978== ==1632978== ==1632978== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1632978== Open file descriptor 12: ==1632978== at 0x10C8322D: pipe (pipe.c:29) ==1632978== by 0x1B42D07D: ??? ==1632978== by 0x155CD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1632978== by 0x1058D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1632978== by 0x10526D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1632978== by 0xF21DD38: PetscInitialize (pinit.c:924) ==1632978== by 0xF09215B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1632978== by 0xF0921A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1632978== by 0x193413: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1632978== by 0x18B14B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1632978== by 0x18E748: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1632978== by 0x18E5E8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1632978== by 0x18EC7F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1632978== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==1632978== ==1632978== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1632978== at 0x10C87BCC: __open_nocancel (open64_nocancel.c:39) ==1632978== by 0x10C0BC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1632978== by 0xF0C7822: ??? ==1632978== by 0xF0C796F: ??? ==1632978== by 0x156726DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1632978== by 0x15672938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1632978== by 0x15628922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1632978== by 0x155CD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1632978== by 0x1058D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1632978== by 0x10526D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1632978== by 0xF21DD38: PetscInitialize (pinit.c:924) ==1632978== by 0xF09215B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1632978== by 0xF0921A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1632978== by 0x193413: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1632978== by 0x18B14B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1632978== by 0x18E748: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1632978== by 0x18E5E8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1632978== by 0x18EC7F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1632978== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==1632978== ==1632978== Open file descriptor 116: ==1632978== ==1632978== ==1632978== Open file descriptor 112: ==1632978== ==1632978== ==1632978== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt ==1632978== ==1632978== ==1632978== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1632978== ==1632978== ==1632978== ==1632978== HEAP SUMMARY: ==1632978== in use at exit: 707,111 bytes in 9,491 blocks ==1632978== total heap usage: 864,358 allocs, 854,867 frees, 1,475,998,053 bytes allocated ==1632978== ==1632978== 448 bytes in 8 blocks are definitely lost in loss record 53 of 81 ==1632978== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1632978== by 0x11C81975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==1632978== by 0x11C7FC0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==1632978== by 0x11C82BB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==1632978== by 0x11C82BD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==1632978== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1632978== by 0x4006567: call_init (dl-init.c:33) ==1632978== by 0x4006567: _dl_init (dl-init.c:117) ==1632978== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1632978== by 0x3: ??? ==1632978== by 0x1FFF0002DE: ??? ==1632978== by 0x1FFF000355: ??? ==1632978== by 0x1FFF000363: ??? ==1632978== by 0x1FFF000370: ??? ==1632978== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1632978== LEAK SUMMARY: ==1632978== definitely lost: 448 bytes in 8 blocks ==1632978== indirectly lost: 0 bytes in 0 blocks ==1632978== possibly lost: 0 bytes in 0 blocks ==1632978== still reachable: 5,944 bytes in 108 blocks ==1632978== suppressed: 700,719 bytes in 9,375 blocks ==1632978== Reachable blocks (those to which a pointer was found) are not shown. ==1632978== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1632978== ==1632978== For lists of detected and suppressed errors, rerun with: -s ==1632978== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 37 from 37)