==1690639== Memcheck, a memory error detector ==1690639== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1690639== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1690639== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation1d -malloc_debug -malloc_dump -memory_info ==1690639== Parent PID: 1674817 ==1690639== ==1690639== ==1690639== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1690639== Open file descriptor 12: ==1690639== at 0x1265D22D: pipe (pipe.c:29) ==1690639== by 0x1B41A07D: ??? ==1690639== by 0x165804CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1690639== by 0x11F67418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1690639== by 0x11F00D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1690639== by 0x10BF7D38: PetscInitialize (pinit.c:924) ==1690639== by 0x10A6C15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1690639== by 0x10A6C1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1690639== by 0x2254EB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1690639== by 0x21CBB7: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1690639== by 0x220694: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1690639== by 0x22058F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1690639== by 0x220BA3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1690639== by 0x21B375: main (TestCryptSimulation1d.cpp:18) ==1690639== ==1690639== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1690639== at 0x12661BCC: __open_nocancel (open64_nocancel.c:39) ==1690639== by 0x125E5C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1690639== by 0x10AA1822: ??? ==1690639== by 0x10AA196F: ??? ==1690639== by 0x166256DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1690639== by 0x16625938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1690639== by 0x165DB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1690639== by 0x165802DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1690639== by 0x11F67418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1690639== by 0x11F00D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1690639== by 0x10BF7D38: PetscInitialize (pinit.c:924) ==1690639== by 0x10A6C15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1690639== by 0x10A6C1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1690639== by 0x2254EB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1690639== by 0x21CBB7: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1690639== by 0x220694: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1690639== by 0x22058F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1690639== by 0x220BA3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1690639== by 0x21B375: main (TestCryptSimulation1d.cpp:18) ==1690639== ==1690639== Open file descriptor 116: ==1690639== ==1690639== ==1690639== Open file descriptor 112: ==1690639== ==1690639== ==1690639== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation1d_valgrind.txt ==1690639== ==1690639== ==1690639== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1690639== ==1690639== ==1690639== ==1690639== HEAP SUMMARY: ==1690639== in use at exit: 706,976 bytes in 9,486 blocks ==1690639== total heap usage: 4,117,890 allocs, 4,108,404 frees, 1,993,221,091 bytes allocated ==1690639== ==1690639== 448 bytes in 8 blocks are definitely lost in loss record 48 of 76 ==1690639== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1690639== by 0xFC8B975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==1690639== by 0xFC89C0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==1690639== by 0xFC8CBB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==1690639== by 0xFC8CBD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==1690639== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1690639== by 0x4006567: call_init (dl-init.c:33) ==1690639== by 0x4006567: _dl_init (dl-init.c:117) ==1690639== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1690639== by 0x3: ??? ==1690639== by 0x1FFF0002FA: ??? ==1690639== by 0x1FFF000363: ??? ==1690639== by 0x1FFF000371: ??? ==1690639== by 0x1FFF00037E: ??? ==1690639== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1690639== LEAK SUMMARY: ==1690639== definitely lost: 448 bytes in 8 blocks ==1690639== indirectly lost: 0 bytes in 0 blocks ==1690639== possibly lost: 0 bytes in 0 blocks ==1690639== still reachable: 5,880 bytes in 107 blocks ==1690639== suppressed: 700,648 bytes in 9,371 blocks ==1690639== Reachable blocks (those to which a pointer was found) are not shown. ==1690639== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1690639== ==1690639== For lists of detected and suppressed errors, rerun with: -s ==1690639== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 36 from 36)