==1676595== Memcheck, a memory error detector ==1676595== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1676595== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1676595== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==1676595== Parent PID: 1674817 ==1676595== ==1676595== ==1676595== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1676595== Open file descriptor 12: ==1676595== at 0xF97722D: pipe (pipe.c:29) ==1676595== by 0x1975A07D: ??? ==1676595== by 0x14D5D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1676595== by 0x11543418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1676595== by 0x114DCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1676595== by 0x101D1D38: PetscInitialize (pinit.c:924) ==1676595== by 0xF23B15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1676595== by 0xF23B1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1676595== by 0x2E28FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1676595== by 0x2D9189: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1676595== by 0x2DD9E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1676595== by 0x2DD886: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1676595== by 0x2DDF1D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1676595== by 0x2D7475: main (TestNodeBasedCellPopulation.cpp:19) ==1676595== ==1676595== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1676595== at 0xF97BBCC: __open_nocancel (open64_nocancel.c:39) ==1676595== by 0xF8FFC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1676595== by 0xF270822: ??? ==1676595== by 0xF27096F: ??? ==1676595== by 0x14E026DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1676595== by 0x14E02938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1676595== by 0x14DB8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1676595== by 0x14D5D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1676595== by 0x11543418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1676595== by 0x114DCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1676595== by 0x101D1D38: PetscInitialize (pinit.c:924) ==1676595== by 0xF23B15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1676595== by 0xF23B1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1676595== by 0x2E28FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1676595== by 0x2D9189: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1676595== by 0x2DD9E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1676595== by 0x2DD886: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1676595== by 0x2DDF1D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1676595== by 0x2D7475: main (TestNodeBasedCellPopulation.cpp:19) ==1676595== ==1676595== Open file descriptor 116: ==1676595== ==1676595== ==1676595== Open file descriptor 112: ==1676595== ==1676595== ==1676595== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulation_valgrind.txt ==1676595== ==1676595== ==1676595== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1676595== ==1676595== ==1676595== ==1676595== HEAP SUMMARY: ==1676595== in use at exit: 706,960 bytes in 9,486 blocks ==1676595== total heap usage: 20,194,904 allocs, 20,185,418 frees, 2,578,065,672 bytes allocated ==1676595== ==1676595== 448 bytes in 8 blocks are definitely lost in loss record 48 of 76 ==1676595== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1676595== by 0xE3C9975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==1676595== by 0xE3C7C0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==1676595== by 0xE3CABB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==1676595== by 0xE3CABD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==1676595== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1676595== by 0x4006567: call_init (dl-init.c:33) ==1676595== by 0x4006567: _dl_init (dl-init.c:117) ==1676595== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1676595== by 0x3: ??? ==1676595== by 0x1FFF0002E6: ??? ==1676595== by 0x1FFF00035A: ??? ==1676595== by 0x1FFF000368: ??? ==1676595== by 0x1FFF000375: ??? ==1676595== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1676595== LEAK SUMMARY: ==1676595== definitely lost: 448 bytes in 8 blocks ==1676595== indirectly lost: 0 bytes in 0 blocks ==1676595== possibly lost: 0 bytes in 0 blocks ==1676595== still reachable: 5,880 bytes in 107 blocks ==1676595== suppressed: 700,632 bytes in 9,371 blocks ==1676595== Reachable blocks (those to which a pointer was found) are not shown. ==1676595== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1676595== ==1676595== For lists of detected and suppressed errors, rerun with: -s ==1676595== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 33 from 33)