==1690314== Memcheck, a memory error detector ==1690314== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1690314== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1690314== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1690314== Parent PID: 1674817 ==1690314== ==1690314== ==1690314== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1690314== Open file descriptor 12: ==1690314== at 0xF98B22D: pipe (pipe.c:29) ==1690314== by 0x1975A07D: ??? ==1690314== by 0x14D5D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1690314== by 0x1162A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1690314== by 0x115C3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1690314== by 0x102BAD38: PetscInitialize (pinit.c:924) ==1690314== by 0xF1AC15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1690314== by 0xF1AC1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1690314== by 0x12C790: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1690314== by 0x127D05: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1690314== by 0x12A3B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1690314== by 0x12A254: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1690314== by 0x12A8EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1690314== by 0x126035: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==1690314== ==1690314== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1690314== at 0xF98FBCC: __open_nocancel (open64_nocancel.c:39) ==1690314== by 0xF913C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1690314== by 0xF1E1822: ??? ==1690314== by 0xF1E196F: ??? ==1690314== by 0x14E026DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1690314== by 0x14E02938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1690314== by 0x14DB8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1690314== by 0x14D5D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1690314== by 0x1162A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1690314== by 0x115C3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1690314== by 0x102BAD38: PetscInitialize (pinit.c:924) ==1690314== by 0xF1AC15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1690314== by 0xF1AC1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1690314== by 0x12C790: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1690314== by 0x127D05: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1690314== by 0x12A3B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1690314== by 0x12A254: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1690314== by 0x12A8EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1690314== by 0x126035: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==1690314== ==1690314== Open file descriptor 116: ==1690314== ==1690314== ==1690314== Open file descriptor 112: ==1690314== ==1690314== ==1690314== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt ==1690314== ==1690314== ==1690314== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1690314== ==1690314== ==1690314== ==1690314== HEAP SUMMARY: ==1690314== in use at exit: 707,031 bytes in 9,490 blocks ==1690314== total heap usage: 674,698 allocs, 665,208 frees, 1,740,615,591 bytes allocated ==1690314== ==1690314== 448 bytes in 8 blocks are definitely lost in loss record 52 of 80 ==1690314== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1690314== by 0xE3C9975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==1690314== by 0xE3C7C0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==1690314== by 0xE3CABB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==1690314== by 0xE3CABD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==1690314== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1690314== by 0x4006567: call_init (dl-init.c:33) ==1690314== by 0x4006567: _dl_init (dl-init.c:117) ==1690314== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1690314== by 0x3: ??? ==1690314== by 0x1FFF0002CE: ??? ==1690314== by 0x1FFF00034E: ??? ==1690314== by 0x1FFF00035C: ??? ==1690314== by 0x1FFF000369: ??? ==1690314== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1690314== LEAK SUMMARY: ==1690314== definitely lost: 448 bytes in 8 blocks ==1690314== indirectly lost: 0 bytes in 0 blocks ==1690314== possibly lost: 0 bytes in 0 blocks ==1690314== still reachable: 5,880 bytes in 107 blocks ==1690314== suppressed: 700,703 bytes in 9,375 blocks ==1690314== Reachable blocks (those to which a pointer was found) are not shown. ==1690314== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1690314== ==1690314== For lists of detected and suppressed errors, rerun with: -s ==1690314== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 37 from 37)