==1711680== Memcheck, a memory error detector ==1711680== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1711680== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1711680== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellSrn -malloc_debug -malloc_dump -memory_info ==1711680== Parent PID: 1710456 ==1711680== ==1711680== ==1711680== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1711680== Open file descriptor 12: ==1711680== at 0xEDE722D: pipe (pipe.c:29) ==1711680== by 0x1975907D: ??? ==1711680== by 0x13CAA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1711680== by 0xEA38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1711680== by 0xE9D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1711680== by 0xD6A8D38: PetscInitialize (pinit.c:924) ==1711680== by 0xD57D15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1711680== by 0xD57D1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1711680== by 0x119821: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1711680== by 0x115133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1711680== by 0x117438: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1711680== by 0x117333: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1711680== by 0x117947: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1711680== by 0x113935: main (TestCellSrn.cpp:18) ==1711680== ==1711680== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1711680== at 0xEDEBBCC: __open_nocancel (open64_nocancel.c:39) ==1711680== by 0xED6FC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1711680== by 0xE932822: ??? ==1711680== by 0xE93296F: ??? ==1711680== by 0x13D4F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1711680== by 0x13D4F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1711680== by 0x13D05922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1711680== by 0x13CAA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1711680== by 0xEA38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1711680== by 0xE9D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1711680== by 0xD6A8D38: PetscInitialize (pinit.c:924) ==1711680== by 0xD57D15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1711680== by 0xD57D1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1711680== by 0x119821: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1711680== by 0x115133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1711680== by 0x117438: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1711680== by 0x117333: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1711680== by 0x117947: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1711680== by 0x113935: main (TestCellSrn.cpp:18) ==1711680== ==1711680== Open file descriptor 116: ==1711680== ==1711680== ==1711680== Open file descriptor 112: ==1711680== ==1711680== ==1711680== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellSrn_valgrind.txt ==1711680== ==1711680== ==1711680== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1711680== ==1711680== ==1711680== ==1711680== HEAP SUMMARY: ==1711680== in use at exit: 707,095 bytes in 9,491 blocks ==1711680== total heap usage: 65,692 allocs, 56,201 frees, 1,354,473,151 bytes allocated ==1711680== ==1711680== 448 bytes in 8 blocks are definitely lost in loss record 53 of 81 ==1711680== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1711680== by 0x103C6975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==1711680== by 0x103C4C0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==1711680== by 0x103C7BB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==1711680== by 0x103C7BD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==1711680== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1711680== by 0x4006567: call_init (dl-init.c:33) ==1711680== by 0x4006567: _dl_init (dl-init.c:117) ==1711680== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1711680== by 0x3: ??? ==1711680== by 0x1FFF000306: ??? ==1711680== by 0x1FFF00036A: ??? ==1711680== by 0x1FFF000378: ??? ==1711680== by 0x1FFF000385: ??? ==1711680== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1711680== LEAK SUMMARY: ==1711680== definitely lost: 448 bytes in 8 blocks ==1711680== indirectly lost: 0 bytes in 0 blocks ==1711680== possibly lost: 0 bytes in 0 blocks ==1711680== still reachable: 5,944 bytes in 108 blocks ==1711680== suppressed: 700,703 bytes in 9,375 blocks ==1711680== Reachable blocks (those to which a pointer was found) are not shown. ==1711680== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1711680== ==1711680== For lists of detected and suppressed errors, rerun with: -s ==1711680== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 37 from 37)