==1726945== Memcheck, a memory error detector ==1726945== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1726945== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1726945== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedBidomainProblem -malloc_debug -malloc_dump -memory_info ==1726945== Parent PID: 1710456 ==1726945== ==1726945== ==1726945== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1726945== Open file descriptor 12: ==1726945== at 0xA95B22D: pipe (pipe.c:29) ==1726945== by 0x142F807D: ??? ==1726945== by 0xD9054CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1726945== by 0xA24B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1726945== by 0xA1E4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1726945== by 0xACE5D38: PetscInitialize (pinit.c:924) ==1726945== by 0xA11015B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1726945== by 0xA1101A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1726945== by 0x1248E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1726945== by 0x11F993: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1726945== by 0x1225FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1726945== by 0x1224F7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1726945== by 0x122B0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1726945== by 0x11E195: main (TestExtendedBidomainProblem.cpp:18) ==1726945== ==1726945== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1726945== at 0xA95FBCC: __open_nocancel (open64_nocancel.c:39) ==1726945== by 0xA8E3C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1726945== by 0xA145822: ??? ==1726945== by 0xA14596F: ??? ==1726945== by 0xD9AA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1726945== by 0xD9AA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1726945== by 0xD960922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1726945== by 0xD9052DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1726945== by 0xA24B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1726945== by 0xA1E4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1726945== by 0xACE5D38: PetscInitialize (pinit.c:924) ==1726945== by 0xA11015B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1726945== by 0xA1101A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1726945== by 0x1248E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1726945== by 0x11F993: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1726945== by 0x1225FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1726945== by 0x1224F7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1726945== by 0x122B0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1726945== by 0x11E195: main (TestExtendedBidomainProblem.cpp:18) ==1726945== ==1726945== Open file descriptor 116: ==1726945== ==1726945== ==1726945== Open file descriptor 112: ==1726945== ==1726945== ==1726945== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedBidomainProblem_valgrind.txt ==1726945== ==1726945== ==1726945== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1726945== ==1726945== ==1726945== ==1726945== HEAP SUMMARY: ==1726945== in use at exit: 707,424 bytes in 9,495 blocks ==1726945== total heap usage: 2,375,577 allocs, 2,366,082 frees, 2,483,516,938 bytes allocated ==1726945== ==1726945== 448 bytes in 8 blocks are definitely lost in loss record 51 of 79 ==1726945== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1726945== by 0x922D975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==1726945== by 0x922BC0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==1726945== by 0x922EBB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==1726945== by 0x922EBD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==1726945== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1726945== by 0x4006567: call_init (dl-init.c:33) ==1726945== by 0x4006567: _dl_init (dl-init.c:117) ==1726945== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1726945== by 0x3: ??? ==1726945== by 0x1FFF0002EE: ??? ==1726945== by 0x1FFF00035D: ??? ==1726945== by 0x1FFF00036B: ??? ==1726945== by 0x1FFF000378: ??? ==1726945== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1726945== LEAK SUMMARY: ==1726945== definitely lost: 448 bytes in 8 blocks ==1726945== indirectly lost: 0 bytes in 0 blocks ==1726945== possibly lost: 0 bytes in 0 blocks ==1726945== still reachable: 5,848 bytes in 106 blocks ==1726945== suppressed: 701,128 bytes in 9,381 blocks ==1726945== Reachable blocks (those to which a pointer was found) are not shown. ==1726945== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1726945== ==1726945== For lists of detected and suppressed errors, rerun with: -s ==1726945== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 39 from 34)