==1783807== Memcheck, a memory error detector ==1783807== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1783807== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1783807== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestMirams2010WntOdeSystem -malloc_debug -malloc_dump -memory_info ==1783807== Parent PID: 1768066 ==1783807== ==1783807== ==1783807== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1783807== Open file descriptor 12: ==1783807== at 0xF47722D: pipe (pipe.c:29) ==1783807== by 0x1B41C07D: ??? ==1783807== by 0x1661C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1783807== by 0x12EEA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1783807== by 0x12E83D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1783807== by 0x11B7AD38: PetscInitialize (pinit.c:924) ==1783807== by 0xF08215B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1783807== by 0xF0821A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1783807== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1783807== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1783807== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1783807== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1783807== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1783807== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) ==1783807== ==1783807== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1783807== at 0xF47BBCC: __open_nocancel (open64_nocancel.c:39) ==1783807== by 0xF3FFC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1783807== by 0xF0B7822: ??? ==1783807== by 0xF0B796F: ??? ==1783807== by 0x166C16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1783807== by 0x166C1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1783807== by 0x16677922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1783807== by 0x1661C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1783807== by 0x12EEA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1783807== by 0x12E83D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1783807== by 0x11B7AD38: PetscInitialize (pinit.c:924) ==1783807== by 0xF08215B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1783807== by 0xF0821A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1783807== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1783807== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1783807== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1783807== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1783807== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1783807== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) ==1783807== ==1783807== Open file descriptor 116: ==1783807== ==1783807== ==1783807== Open file descriptor 112: ==1783807== ==1783807== ==1783807== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMirams2010WntOdeSystem_valgrind.txt ==1783807== ==1783807== ==1783807== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1783807== ==1783807== ==1783807== ==1783807== HEAP SUMMARY: ==1783807== in use at exit: 707,047 bytes in 9,490 blocks ==1783807== total heap usage: 69,172 allocs, 59,682 frees, 1,355,457,374 bytes allocated ==1783807== ==1783807== 448 bytes in 8 blocks are definitely lost in loss record 52 of 80 ==1783807== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1783807== by 0x10477975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==1783807== by 0x10475C0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==1783807== by 0x10478BB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==1783807== by 0x10478BD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==1783807== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1783807== by 0x4006567: call_init (dl-init.c:33) ==1783807== by 0x4006567: _dl_init (dl-init.c:117) ==1783807== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1783807== by 0x3: ??? ==1783807== by 0x1FFF0002F2: ??? ==1783807== by 0x1FFF000360: ??? ==1783807== by 0x1FFF00036E: ??? ==1783807== by 0x1FFF00037B: ??? ==1783807== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1783807== LEAK SUMMARY: ==1783807== definitely lost: 448 bytes in 8 blocks ==1783807== indirectly lost: 0 bytes in 0 blocks ==1783807== possibly lost: 0 bytes in 0 blocks ==1783807== still reachable: 5,880 bytes in 107 blocks ==1783807== suppressed: 700,719 bytes in 9,375 blocks ==1783807== Reachable blocks (those to which a pointer was found) are not shown. ==1783807== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1783807== ==1783807== For lists of detected and suppressed errors, rerun with: -s ==1783807== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 37 from 37)