==1850755== Memcheck, a memory error detector ==1850755== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1850755== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1850755== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryMesh -malloc_debug -malloc_dump -memory_info ==1850755== Parent PID: 1849946 ==1850755== ==1850755== ==1850755== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1850755== Open file descriptor 12: ==1850755== at 0x829022D: pipe (pipe.c:29) ==1850755== by 0x1009407D: ??? ==1850755== by 0xB9CB4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1850755== by 0x7AB3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1850755== by 0x7A4CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1850755== by 0x6743D38: PetscInitialize (pinit.c:924) ==1850755== by 0x65B615B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1850755== by 0x65B61A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1850755== by 0x161521: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1850755== by 0x15BD29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1850755== by 0x15EEAE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1850755== by 0x15ED4F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1850755== by 0x15F3E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1850755== by 0x15A015: main (TestImmersedBoundaryMesh.cpp:19) ==1850755== ==1850755== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1850755== at 0x8294BCC: __open_nocancel (open64_nocancel.c:39) ==1850755== by 0x8218C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1850755== by 0x65EB822: ??? ==1850755== by 0x65EB96F: ??? ==1850755== by 0xBA706DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1850755== by 0xBA70938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1850755== by 0xBA26922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1850755== by 0xB9CB2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1850755== by 0x7AB3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1850755== by 0x7A4CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1850755== by 0x6743D38: PetscInitialize (pinit.c:924) ==1850755== by 0x65B615B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1850755== by 0x65B61A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1850755== by 0x161521: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1850755== by 0x15BD29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1850755== by 0x15EEAE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1850755== by 0x15ED4F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1850755== by 0x15F3E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1850755== by 0x15A015: main (TestImmersedBoundaryMesh.cpp:19) ==1850755== ==1850755== Open file descriptor 116: ==1850755== ==1850755== ==1850755== Open file descriptor 112: ==1850755== ==1850755== ==1850755== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryMesh_valgrind.txt ==1850755== ==1850755== ==1850755== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1850755== ==1850755== ==1850755== ==1850755== HEAP SUMMARY: ==1850755== in use at exit: 1,239,967 bytes in 9,557 blocks ==1850755== total heap usage: 104,905 allocs, 95,348 frees, 1,386,882,034 bytes allocated ==1850755== ==1850755== 328 (288 direct, 40 indirect) bytes in 2 blocks are definitely lost in loss record 60 of 110 ==1850755== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1850755== by 0x16380A: TestImmersedBoundaryMesh::TestImmersedBoundaryElementAndLaminaIterators() (TestImmersedBoundaryMesh.hpp:173) ==1850755== by 0x1873CE: TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators::runTest() (TestImmersedBoundaryMesh.cpp:61) ==1850755== by 0x15B324: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==1850755== by 0x15F15C: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==1850755== by 0x15F041: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==1850755== by 0x15EEE7: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==1850755== by 0x15ED4F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1850755== by 0x15F3E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1850755== by 0x15A015: main (TestImmersedBoundaryMesh.cpp:19) ==1850755== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN24TestImmersedBoundaryMesh45TestImmersedBoundaryElementAndLaminaIteratorsEv fun:_ZN86TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==1850755== 328 (288 direct, 40 indirect) bytes in 2 blocks are definitely lost in loss record 61 of 110 ==1850755== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1850755== by 0x1638D6: TestImmersedBoundaryMesh::TestImmersedBoundaryElementAndLaminaIterators() (TestImmersedBoundaryMesh.hpp:175) ==1850755== by 0x1873CE: TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators::runTest() (TestImmersedBoundaryMesh.cpp:61) ==1850755== by 0x15B324: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==1850755== by 0x15F15C: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==1850755== by 0x15F041: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==1850755== by 0x15EEE7: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==1850755== by 0x15ED4F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1850755== by 0x15F3E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1850755== by 0x15A015: main (TestImmersedBoundaryMesh.cpp:19) ==1850755== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN24TestImmersedBoundaryMesh45TestImmersedBoundaryElementAndLaminaIteratorsEv fun:_ZN86TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==1850755== 448 bytes in 8 blocks are definitely lost in loss record 78 of 110 ==1850755== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1850755== by 0x5746975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==1850755== by 0x5744C0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==1850755== by 0x5747BB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==1850755== by 0x5747BD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==1850755== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1850755== by 0x4006567: call_init (dl-init.c:33) ==1850755== by 0x4006567: _dl_init (dl-init.c:117) ==1850755== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1850755== by 0x3: ??? ==1850755== by 0x1FFF0002F6: ??? ==1850755== by 0x1FFF000361: ??? ==1850755== by 0x1FFF00036F: ??? ==1850755== by 0x1FFF00037C: ??? ==1850755== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1850755== 696 (576 direct, 120 indirect) bytes in 4 blocks are definitely lost in loss record 95 of 110 ==1850755== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1850755== by 0x163870: TestImmersedBoundaryMesh::TestImmersedBoundaryElementAndLaminaIterators() (TestImmersedBoundaryMesh.hpp:174) ==1850755== by 0x1873CE: TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators::runTest() (TestImmersedBoundaryMesh.cpp:61) ==1850755== by 0x15B324: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==1850755== by 0x15F15C: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==1850755== by 0x15F041: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==1850755== by 0x15EEE7: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==1850755== by 0x15ED4F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1850755== by 0x15F3E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1850755== by 0x15A015: main (TestImmersedBoundaryMesh.cpp:19) ==1850755== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN24TestImmersedBoundaryMesh45TestImmersedBoundaryElementAndLaminaIteratorsEv fun:_ZN86TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==1850755== 1,288 (280 direct, 1,008 indirect) bytes in 7 blocks are definitely lost in loss record 99 of 110 ==1850755== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1850755== by 0x198923: __gnu_cxx::new_allocator >::allocate(unsigned long, void const*) (new_allocator.h:127) ==1850755== by 0x1980BB: std::allocator_traits > >::allocate(std::allocator >&, unsigned long) (alloc_traits.h:464) ==1850755== by 0x197C2E: std::_Rb_tree, std::less, std::allocator >::_M_get_node() (stl_tree.h:561) ==1850755== by 0x196F3D: std::_Rb_tree_node* std::_Rb_tree, std::less, std::allocator >::_M_create_node(unsigned int const&) (stl_tree.h:611) ==1850755== by 0x195940: std::_Rb_tree_node* std::_Rb_tree, std::less, std::allocator >::_Alloc_node::operator()(unsigned int const&) const (stl_tree.h:529) ==1850755== by 0x193E95: std::_Rb_tree_iterator std::_Rb_tree, std::less, std::allocator >::_M_insert_, std::less, std::allocator >::_Alloc_node>(std::_Rb_tree_node_base*, std::_Rb_tree_node_base*, unsigned int const&, std::_Rb_tree, std::less, std::allocator >::_Alloc_node&) (stl_tree.h:1784) ==1850755== by 0x5887B37: std::pair, bool> std::_Rb_tree, std::less, std::allocator >::_M_insert_unique(unsigned int const&) (stl_tree.h:2129) ==1850755== by 0x5883D9F: std::set, std::allocator >::insert(unsigned int const&) (stl_set.h:512) ==1850755== by 0x59FF133: Node<2u>::AddElement(unsigned int) (Node.cpp:270) ==1850755== by 0x163994: TestImmersedBoundaryMesh::TestImmersedBoundaryElementAndLaminaIterators() (TestImmersedBoundaryMesh.hpp:178) ==1850755== by 0x1873CE: TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators::runTest() (TestImmersedBoundaryMesh.cpp:61) ==1850755== by 0x15B324: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==1850755== by 0x15F15C: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==1850755== by 0x15F041: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==1850755== by 0x15EEE7: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==1850755== by 0x15ED4F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1850755== by 0x15F3E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1850755== by 0x15A015: main (TestImmersedBoundaryMesh.cpp:19) ==1850755== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN9__gnu_cxx13new_allocatorISt13_Rb_tree_nodeIjEE8allocateEmPKv fun:_ZNSt16allocator_traitsISaISt13_Rb_tree_nodeIjEEE8allocateERS2_m fun:_ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE11_M_get_nodeEv fun:_ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE14_M_create_nodeIJRKjEEEPSt13_Rb_tree_nodeIjEDpOT_ fun:_ZNKSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE11_Alloc_nodeclIRKjEEPSt13_Rb_tree_nodeIjEOT_ fun:_ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE10_M_insert_IRKjNS5_11_Alloc_nodeEEESt17_Rb_tree_iteratorIjEPSt18_Rb_tree_node_baseSD_OT_RT0_ fun:_ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE16_M_insert_uniqueIRKjEESt4pairISt17_Rb_tree_iteratorIjEbEOT_ fun:_ZNSt3setIjSt4lessIjESaIjEE6insertERKj fun:_ZN4NodeILj2EE10AddElementEj fun:_ZN24TestImmersedBoundaryMesh45TestImmersedBoundaryElementAndLaminaIteratorsEv fun:_ZN86TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==1850755== 262,896 (752 direct, 262,144 indirect) bytes in 1 blocks are definitely lost in loss record 107 of 110 ==1850755== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1850755== by 0x162049: TestImmersedBoundaryMesh::TestSetupFluidVelocityGrids() (TestImmersedBoundaryMesh.hpp:85) ==1850755== by 0x187226: TestDescription_TestImmersedBoundaryMesh_TestSetupFluidVelocityGrids::runTest() (TestImmersedBoundaryMesh.cpp:37) ==1850755== by 0x15B324: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==1850755== by 0x15F15C: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==1850755== by 0x15F041: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==1850755== by 0x15EEE7: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==1850755== by 0x15ED4F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1850755== by 0x15F3E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1850755== by 0x15A015: main (TestImmersedBoundaryMesh.cpp:19) ==1850755== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN24TestImmersedBoundaryMesh27TestSetupFluidVelocityGridsEv fun:_ZN68TestDescription_TestImmersedBoundaryMesh_TestSetupFluidVelocityGrids7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==1850755== 264,976 (752 direct, 264,224 indirect) bytes in 1 blocks are definitely lost in loss record 108 of 110 ==1850755== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1850755== by 0x1619CD: TestImmersedBoundaryMesh::TestSolveNodeAndElementMapping() (TestImmersedBoundaryMesh.hpp:74) ==1850755== by 0x1871BC: TestDescription_TestImmersedBoundaryMesh_TestSolveNodeAndElementMapping::runTest() (TestImmersedBoundaryMesh.cpp:31) ==1850755== by 0x15B324: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==1850755== by 0x15F15C: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==1850755== by 0x15F041: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==1850755== by 0x15EEE7: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==1850755== by 0x15ED4F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1850755== by 0x15F3E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1850755== by 0x15A015: main (TestImmersedBoundaryMesh.cpp:19) ==1850755== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN24TestImmersedBoundaryMesh30TestSolveNodeAndElementMappingEv fun:_ZN71TestDescription_TestImmersedBoundaryMesh_TestSolveNodeAndElementMapping7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==1850755== LEAK SUMMARY: ==1850755== definitely lost: 3,384 bytes in 25 blocks ==1850755== indirectly lost: 527,576 bytes in 50 blocks ==1850755== possibly lost: 0 bytes in 0 blocks ==1850755== still reachable: 8,400 bytes in 107 blocks ==1850755== suppressed: 700,607 bytes in 9,375 blocks ==1850755== Reachable blocks (those to which a pointer was found) are not shown. ==1850755== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1850755== ==1850755== For lists of detected and suppressed errors, rerun with: -s ==1850755== ERROR SUMMARY: 7 errors from 7 contexts (suppressed: 34 from 34)