==1852605== Memcheck, a memory error detector ==1852605== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1852605== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1852605== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==1852605== Parent PID: 1849946 ==1852605== ==1852605== ==1852605== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1852605== Open file descriptor 12: ==1852605== at 0xFE4B22D: pipe (pipe.c:29) ==1852605== by 0x1975A07D: ??? ==1852605== by 0x14E814CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1852605== by 0x11AA6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1852605== by 0x11A3FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1852605== by 0x10736D38: PetscInitialize (pinit.c:924) ==1852605== by 0xF1AC15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1852605== by 0xF1AC1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1852605== by 0x1D35D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1852605== by 0x1CCF69: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1852605== by 0x1D0704: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1852605== by 0x1D05A4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1852605== by 0x1D0C3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1852605== by 0x1CB255: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==1852605== ==1852605== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1852605== at 0xFE4FBCC: __open_nocancel (open64_nocancel.c:39) ==1852605== by 0xFDD3C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1852605== by 0xF1E1822: ??? ==1852605== by 0xF1E196F: ??? ==1852605== by 0x14F266DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1852605== by 0x14F26938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1852605== by 0x14EDC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1852605== by 0x14E812DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1852605== by 0x11AA6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1852605== by 0x11A3FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1852605== by 0x10736D38: PetscInitialize (pinit.c:924) ==1852605== by 0xF1AC15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1852605== by 0xF1AC1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1852605== by 0x1D35D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1852605== by 0x1CCF69: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1852605== by 0x1D0704: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1852605== by 0x1D05A4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1852605== by 0x1D0C3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1852605== by 0x1CB255: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==1852605== ==1852605== Open file descriptor 116: ==1852605== ==1852605== ==1852605== Open file descriptor 112: ==1852605== ==1852605== ==1852605== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==1852605== ==1852605== ==1852605== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1852605== ==1852605== ==1852605== ==1852605== HEAP SUMMARY: ==1852605== in use at exit: 706,960 bytes in 9,486 blocks ==1852605== total heap usage: 7,097,888 allocs, 7,088,402 frees, 8,099,052,539 bytes allocated ==1852605== ==1852605== 448 bytes in 8 blocks are definitely lost in loss record 48 of 76 ==1852605== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1852605== by 0xE3C9975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==1852605== by 0xE3C7C0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==1852605== by 0xE3CABB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==1852605== by 0xE3CABD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==1852605== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1852605== by 0x4006567: call_init (dl-init.c:33) ==1852605== by 0x4006567: _dl_init (dl-init.c:117) ==1852605== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1852605== by 0x3: ??? ==1852605== by 0x1FFF0002BA: ??? ==1852605== by 0x1FFF000343: ??? ==1852605== by 0x1FFF000351: ??? ==1852605== by 0x1FFF00035E: ??? ==1852605== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1852605== LEAK SUMMARY: ==1852605== definitely lost: 448 bytes in 8 blocks ==1852605== indirectly lost: 0 bytes in 0 blocks ==1852605== possibly lost: 0 bytes in 0 blocks ==1852605== still reachable: 5,880 bytes in 107 blocks ==1852605== suppressed: 700,632 bytes in 9,371 blocks ==1852605== Reachable blocks (those to which a pointer was found) are not shown. ==1852605== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1852605== ==1852605== For lists of detected and suppressed errors, rerun with: -s ==1852605== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 33 from 33)