==1908334== Memcheck, a memory error detector ==1908334== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1908334== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1908334== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==1908334== Parent PID: 1906117 ==1908334== ==1908334== ==1908334== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1908334== Open file descriptor 12: ==1908334== at 0xEC3522D: pipe (pipe.c:29) ==1908334== by 0x18A0307D: ??? ==1908334== by 0x140064CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1908334== by 0x108D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1908334== by 0x1086DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1908334== by 0xF564D38: PetscInitialize (pinit.c:924) ==1908334== by 0xE456FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1908334== by 0xE45701D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1908334== by 0x13285A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1908334== by 0x12D813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1908334== by 0x12FFCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1908334== by 0x12FEC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1908334== by 0x1304DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1908334== by 0x12C015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==1908334== ==1908334== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1908334== at 0xEC39BCC: __open_nocancel (open64_nocancel.c:39) ==1908334== by 0xEBBDC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1908334== by 0xE48B822: ??? ==1908334== by 0xE48B96F: ??? ==1908334== by 0x140AB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1908334== by 0x140AB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1908334== by 0x14061922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1908334== by 0x140062DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1908334== by 0x108D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1908334== by 0x1086DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1908334== by 0xF564D38: PetscInitialize (pinit.c:924) ==1908334== by 0xE456FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1908334== by 0xE45701D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1908334== by 0x13285A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1908334== by 0x12D813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1908334== by 0x12FFCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1908334== by 0x12FEC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1908334== by 0x1304DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1908334== by 0x12C015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==1908334== ==1908334== Open file descriptor 116: ==1908334== ==1908334== ==1908334== Open file descriptor 112: ==1908334== ==1908334== ==1908334== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==1908334== ==1908334== ==1908334== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1908334== ==1908334== ==1908334== ==1908334== HEAP SUMMARY: ==1908334== in use at exit: 700,688 bytes in 9,374 blocks ==1908334== total heap usage: 6,678,136 allocs, 6,668,762 frees, 9,011,160,191 bytes allocated ==1908334== ==1908334== LEAK SUMMARY: ==1908334== definitely lost: 0 bytes in 0 blocks ==1908334== indirectly lost: 0 bytes in 0 blocks ==1908334== possibly lost: 0 bytes in 0 blocks ==1908334== still reachable: 56 bytes in 3 blocks ==1908334== suppressed: 700,632 bytes in 9,371 blocks ==1908334== Reachable blocks (those to which a pointer was found) are not shown. ==1908334== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1908334== ==1908334== For lists of detected and suppressed errors, rerun with: -s ==1908334== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)