==2036515== Memcheck, a memory error detector ==2036515== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2036515== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2036515== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==2036515== Parent PID: 2021734 ==2036515== ==2036515== ==2036515== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2036515== Open file descriptor 12: ==2036515== at 0xEFD422D: pipe (pipe.c:29) ==2036515== by 0x18A0407D: ??? ==2036515== by 0x140074CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2036515== by 0x108D5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2036515== by 0x1086ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2036515== by 0xF565D38: PetscInitialize (pinit.c:924) ==2036515== by 0xE7F40B3: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2036515== by 0xE7F4101: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2036515== by 0x13596A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2036515== by 0x1304FB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2036515== by 0x133180: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2036515== by 0x133020: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2036515== by 0x1336B7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2036515== by 0x12E7F5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==2036515== ==2036515== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2036515== at 0xEFD8BCC: __open_nocancel (open64_nocancel.c:39) ==2036515== by 0xEF5CC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2036515== by 0xE828822: ??? ==2036515== by 0xE82896F: ??? ==2036515== by 0x140AC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2036515== by 0x140AC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2036515== by 0x14062922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2036515== by 0x140072DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2036515== by 0x108D5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2036515== by 0x1086ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2036515== by 0xF565D38: PetscInitialize (pinit.c:924) ==2036515== by 0xE7F40B3: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2036515== by 0xE7F4101: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2036515== by 0x13596A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2036515== by 0x1304FB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2036515== by 0x133180: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2036515== by 0x133020: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2036515== by 0x1336B7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2036515== by 0x12E7F5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==2036515== ==2036515== Open file descriptor 116: ==2036515== ==2036515== ==2036515== Open file descriptor 112: ==2036515== ==2036515== ==2036515== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt ==2036515== ==2036515== ==2036515== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2036515== ==2036515== ==2036515== ==2036515== HEAP SUMMARY: ==2036515== in use at exit: 700,759 bytes in 9,378 blocks ==2036515== total heap usage: 2,358,542 allocs, 2,349,164 frees, 1,791,525,632 bytes allocated ==2036515== ==2036515== LEAK SUMMARY: ==2036515== definitely lost: 0 bytes in 0 blocks ==2036515== indirectly lost: 0 bytes in 0 blocks ==2036515== possibly lost: 0 bytes in 0 blocks ==2036515== still reachable: 56 bytes in 3 blocks ==2036515== suppressed: 700,703 bytes in 9,375 blocks ==2036515== Reachable blocks (those to which a pointer was found) are not shown. ==2036515== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2036515== ==2036515== For lists of detected and suppressed errors, rerun with: -s ==2036515== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)