==2083687== Memcheck, a memory error detector ==2083687== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2083687== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2083687== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainProblem -malloc_debug -malloc_dump -memory_info ==2083687== Parent PID: 2067151 ==2083687== ==2083687== ==2083687== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2083687== Open file descriptor 12: ==2083687== at 0xC0B922D: pipe (pipe.c:29) ==2083687== by 0x142F907D: ??? ==2083687== by 0xFAAE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2083687== by 0xB9A9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083687== by 0xB942D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083687== by 0xA639D38: PetscInitialize (pinit.c:924) ==2083687== by 0xA4AC15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2083687== by 0xA4AC1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2083687== by 0x14093E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2083687== by 0x13A0F5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2083687== by 0x13D7D0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2083687== by 0x13D670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2083687== by 0x13DD07: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2083687== by 0x138285: main (TestBidomainProblem.cpp:19) ==2083687== ==2083687== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2083687== at 0xC0BDBCC: __open_nocancel (open64_nocancel.c:39) ==2083687== by 0xC041C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2083687== by 0xA4E1822: ??? ==2083687== by 0xA4E196F: ??? ==2083687== by 0xFB536DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2083687== by 0xFB53938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2083687== by 0xFB09922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2083687== by 0xFAAE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2083687== by 0xB9A9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083687== by 0xB942D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083687== by 0xA639D38: PetscInitialize (pinit.c:924) ==2083687== by 0xA4AC15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2083687== by 0xA4AC1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2083687== by 0x14093E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2083687== by 0x13A0F5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2083687== by 0x13D7D0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2083687== by 0x13D670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2083687== by 0x13DD07: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2083687== by 0x138285: main (TestBidomainProblem.cpp:19) ==2083687== ==2083687== Open file descriptor 116: ==2083687== ==2083687== ==2083687== Open file descriptor 112: ==2083687== ==2083687== ==2083687== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainProblem_valgrind.txt ==2083687== ==2083687== ==2083687== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2083687== ==2083687== ==2083687== ==2083687== HEAP SUMMARY: ==2083687== in use at exit: 707,495 bytes in 9,499 blocks ==2083687== total heap usage: 587,218 allocs, 577,719 frees, 1,564,378,098 bytes allocated ==2083687== ==2083687== 448 bytes in 8 blocks are definitely lost in loss record 55 of 80 ==2083687== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2083687== by 0x95C9875: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==2083687== by 0x95C7B0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==2083687== by 0x95CAAB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==2083687== by 0x95CAAD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==2083687== by 0x400647D: call_init.part.0 (dl-init.c:70) ==2083687== by 0x4006567: call_init (dl-init.c:33) ==2083687== by 0x4006567: _dl_init (dl-init.c:117) ==2083687== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==2083687== by 0x3: ??? ==2083687== by 0x1FFF00030A: ??? ==2083687== by 0x1FFF000371: ??? ==2083687== by 0x1FFF00037F: ??? ==2083687== by 0x1FFF00038C: ??? ==2083687== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==2083687== LEAK SUMMARY: ==2083687== definitely lost: 448 bytes in 8 blocks ==2083687== indirectly lost: 0 bytes in 0 blocks ==2083687== possibly lost: 0 bytes in 0 blocks ==2083687== still reachable: 5,848 bytes in 106 blocks ==2083687== suppressed: 701,199 bytes in 9,385 blocks ==2083687== Reachable blocks (those to which a pointer was found) are not shown. ==2083687== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2083687== ==2083687== For lists of detected and suppressed errors, rerun with: -s ==2083687== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 100 from 35)