==2083709== Memcheck, a memory error detector ==2083709== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2083709== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2083709== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainWithSvi -malloc_debug -malloc_dump -memory_info ==2083709== Parent PID: 2067151 ==2083709== ==2083709== ==2083709== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2083709== Open file descriptor 12: ==2083709== at 0xA7B122D: pipe (pipe.c:29) ==2083709== by 0x142F807D: ??? ==2083709== by 0xFAFC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2083709== by 0xBEA9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083709== by 0xBE42D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083709== by 0xAB39D38: PetscInitialize (pinit.c:924) ==2083709== by 0xA09D15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2083709== by 0xA09D1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2083709== by 0x120EA2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2083709== by 0x11C673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2083709== by 0x11EA90: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2083709== by 0x11E98B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2083709== by 0x11EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2083709== by 0x11AE75: main (TestBidomainWithSvi.cpp:18) ==2083709== ==2083709== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2083709== at 0xA7B5BCC: __open_nocancel (open64_nocancel.c:39) ==2083709== by 0xA739C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2083709== by 0xA0D2822: ??? ==2083709== by 0xA0D296F: ??? ==2083709== by 0xFBA16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2083709== by 0xFBA1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2083709== by 0xFB57922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2083709== by 0xFAFC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2083709== by 0xBEA9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083709== by 0xBE42D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083709== by 0xAB39D38: PetscInitialize (pinit.c:924) ==2083709== by 0xA09D15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2083709== by 0xA09D1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2083709== by 0x120EA2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2083709== by 0x11C673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2083709== by 0x11EA90: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2083709== by 0x11E98B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2083709== by 0x11EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2083709== by 0x11AE75: main (TestBidomainWithSvi.cpp:18) ==2083709== ==2083709== Open file descriptor 116: ==2083709== ==2083709== ==2083709== Open file descriptor 112: ==2083709== ==2083709== ==2083709== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainWithSvi_valgrind.txt ==2083709== ==2083709== ==2083709== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2083709== ==2083709== ==2083709== ==2083709== HEAP SUMMARY: ==2083709== in use at exit: 707,424 bytes in 9,495 blocks ==2083709== total heap usage: 3,543,835 allocs, 3,534,340 frees, 2,062,102,062 bytes allocated ==2083709== ==2083709== 448 bytes in 8 blocks are definitely lost in loss record 51 of 79 ==2083709== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2083709== by 0x922D875: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==2083709== by 0x922BB0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==2083709== by 0x922EAB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==2083709== by 0x922EAD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==2083709== by 0x400647D: call_init.part.0 (dl-init.c:70) ==2083709== by 0x4006567: call_init (dl-init.c:33) ==2083709== by 0x4006567: _dl_init (dl-init.c:117) ==2083709== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==2083709== by 0x3: ??? ==2083709== by 0x1FFF00030A: ??? ==2083709== by 0x1FFF000371: ??? ==2083709== by 0x1FFF00037F: ??? ==2083709== by 0x1FFF00038C: ??? ==2083709== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==2083709== LEAK SUMMARY: ==2083709== definitely lost: 448 bytes in 8 blocks ==2083709== indirectly lost: 0 bytes in 0 blocks ==2083709== possibly lost: 0 bytes in 0 blocks ==2083709== still reachable: 5,848 bytes in 106 blocks ==2083709== suppressed: 701,128 bytes in 9,381 blocks ==2083709== Reachable blocks (those to which a pointer was found) are not shown. ==2083709== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2083709== ==2083709== For lists of detected and suppressed errors, rerun with: -s ==2083709== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 72 from 34)