==2068370== Memcheck, a memory error detector ==2068370== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2068370== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2068370== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCell -malloc_debug -malloc_dump -memory_info ==2068370== Parent PID: 2067151 ==2068370== ==2068370== ==2068370== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2068370== Open file descriptor 12: ==2068370== at 0xEDE622D: pipe (pipe.c:29) ==2068370== by 0x1975907D: ??? ==2068370== by 0x13CA94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2068370== by 0xEA37418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2068370== by 0xE9D0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2068370== by 0xD6A7D38: PetscInitialize (pinit.c:924) ==2068370== by 0xD57C15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2068370== by 0xD57C1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2068370== by 0x1292D3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2068370== by 0x123FC5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2068370== by 0x126EA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2068370== by 0x126D42: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2068370== by 0x1273D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2068370== by 0x1222F5: main (TestCell.cpp:19) ==2068370== ==2068370== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2068370== at 0xEDEABCC: __open_nocancel (open64_nocancel.c:39) ==2068370== by 0xED6EC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2068370== by 0xE931822: ??? ==2068370== by 0xE93196F: ??? ==2068370== by 0x13D4E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2068370== by 0x13D4E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2068370== by 0x13D04922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2068370== by 0x13CA92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2068370== by 0xEA37418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2068370== by 0xE9D0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2068370== by 0xD6A7D38: PetscInitialize (pinit.c:924) ==2068370== by 0xD57C15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2068370== by 0xD57C1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2068370== by 0x1292D3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2068370== by 0x123FC5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2068370== by 0x126EA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2068370== by 0x126D42: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2068370== by 0x1273D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2068370== by 0x1222F5: main (TestCell.cpp:19) ==2068370== ==2068370== Open file descriptor 116: ==2068370== ==2068370== ==2068370== Open file descriptor 112: ==2068370== ==2068370== ==2068370== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCell_valgrind.txt ==2068370== ==2068370== ==2068370== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2068370== ==2068370== ==2068370== ==2068370== HEAP SUMMARY: ==2068370== in use at exit: 707,088 bytes in 9,487 blocks ==2068370== total heap usage: 5,185,853 allocs, 5,176,366 frees, 1,834,274,480 bytes allocated ==2068370== ==2068370== 448 bytes in 8 blocks are definitely lost in loss record 49 of 77 ==2068370== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2068370== by 0x103C5875: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==2068370== by 0x103C3B0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==2068370== by 0x103C6AB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==2068370== by 0x103C6AD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==2068370== by 0x400647D: call_init.part.0 (dl-init.c:70) ==2068370== by 0x4006567: call_init (dl-init.c:33) ==2068370== by 0x4006567: _dl_init (dl-init.c:117) ==2068370== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==2068370== by 0x3: ??? ==2068370== by 0x1FFF000316: ??? ==2068370== by 0x1FFF000377: ??? ==2068370== by 0x1FFF000385: ??? ==2068370== by 0x1FFF000392: ??? ==2068370== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==2068370== LEAK SUMMARY: ==2068370== definitely lost: 448 bytes in 8 blocks ==2068370== indirectly lost: 0 bytes in 0 blocks ==2068370== possibly lost: 0 bytes in 0 blocks ==2068370== still reachable: 6,008 bytes in 108 blocks ==2068370== suppressed: 700,632 bytes in 9,371 blocks ==2068370== Reachable blocks (those to which a pointer was found) are not shown. ==2068370== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2068370== ==2068370== For lists of detected and suppressed errors, rerun with: -s ==2068370== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 33 from 33)