==2083099== Memcheck, a memory error detector ==2083099== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2083099== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2083099== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==2083099== Parent PID: 2067151 ==2083099== ==2083099== ==2083099== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2083099== Open file descriptor 12: ==2083099== at 0x1265C22D: pipe (pipe.c:29) ==2083099== by 0x1B41A07D: ??? ==2083099== by 0x165804CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2083099== by 0x11F66418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083099== by 0x11EFFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083099== by 0x10BF6D38: PetscInitialize (pinit.c:924) ==2083099== by 0x10A6B15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2083099== by 0x10A6B1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2083099== by 0x2247F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2083099== by 0x21BFC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2083099== by 0x21FBD0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2083099== by 0x21FA70: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2083099== by 0x220107: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2083099== by 0x21A2B5: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==2083099== ==2083099== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2083099== at 0x12660BCC: __open_nocancel (open64_nocancel.c:39) ==2083099== by 0x125E4C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2083099== by 0x10AA0822: ??? ==2083099== by 0x10AA096F: ??? ==2083099== by 0x166256DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2083099== by 0x16625938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2083099== by 0x165DB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2083099== by 0x165802DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2083099== by 0x11F66418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083099== by 0x11EFFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2083099== by 0x10BF6D38: PetscInitialize (pinit.c:924) ==2083099== by 0x10A6B15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2083099== by 0x10A6B1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2083099== by 0x2247F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2083099== by 0x21BFC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2083099== by 0x21FBD0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2083099== by 0x21FA70: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2083099== by 0x220107: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2083099== by 0x21A2B5: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==2083099== ==2083099== Open file descriptor 116: ==2083099== ==2083099== ==2083099== Open file descriptor 112: ==2083099== ==2083099== ==2083099== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==2083099== ==2083099== ==2083099== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2083099== ==2083099== ==2083099== ==2083099== HEAP SUMMARY: ==2083099== in use at exit: 706,976 bytes in 9,486 blocks ==2083099== total heap usage: 3,715,755 allocs, 3,706,269 frees, 1,635,877,891 bytes allocated ==2083099== ==2083099== 448 bytes in 8 blocks are definitely lost in loss record 48 of 76 ==2083099== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2083099== by 0xFC8A875: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==2083099== by 0xFC88B0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==2083099== by 0xFC8BAB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==2083099== by 0xFC8BAD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==2083099== by 0x400647D: call_init.part.0 (dl-init.c:70) ==2083099== by 0x4006567: call_init (dl-init.c:33) ==2083099== by 0x4006567: _dl_init (dl-init.c:117) ==2083099== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==2083099== by 0x3: ??? ==2083099== by 0x1FFF0002CA: ??? ==2083099== by 0x1FFF000350: ??? ==2083099== by 0x1FFF00035E: ??? ==2083099== by 0x1FFF00036B: ??? ==2083099== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==2083099== LEAK SUMMARY: ==2083099== definitely lost: 448 bytes in 8 blocks ==2083099== indirectly lost: 0 bytes in 0 blocks ==2083099== possibly lost: 0 bytes in 0 blocks ==2083099== still reachable: 5,880 bytes in 107 blocks ==2083099== suppressed: 700,648 bytes in 9,371 blocks ==2083099== Reachable blocks (those to which a pointer was found) are not shown. ==2083099== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2083099== ==2083099== For lists of detected and suppressed errors, rerun with: -s ==2083099== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 33 from 33)