==2082900== Memcheck, a memory error detector ==2082900== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2082900== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2082900== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOdeBasedCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==2082900== Parent PID: 2067151 ==2082900== ==2082900== ==2082900== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2082900== Open file descriptor 12: ==2082900== at 0x10C7222D: pipe (pipe.c:29) ==2082900== by 0x1B41C07D: ??? ==2082900== by 0x155BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2082900== by 0x1057C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2082900== by 0x10515D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2082900== by 0xF20CD38: PetscInitialize (pinit.c:924) ==2082900== by 0xF08115B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2082900== by 0xF0811A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2082900== by 0x193413: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2082900== by 0x18B14B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2082900== by 0x18E748: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2082900== by 0x18E5E8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2082900== by 0x18EC7F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2082900== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==2082900== ==2082900== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2082900== at 0x10C76BCC: __open_nocancel (open64_nocancel.c:39) ==2082900== by 0x10BFAC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2082900== by 0xF0B6822: ??? ==2082900== by 0xF0B696F: ??? ==2082900== by 0x156616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2082900== by 0x15661938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2082900== by 0x15617922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2082900== by 0x155BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2082900== by 0x1057C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2082900== by 0x10515D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2082900== by 0xF20CD38: PetscInitialize (pinit.c:924) ==2082900== by 0xF08115B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2082900== by 0xF0811A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2082900== by 0x193413: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2082900== by 0x18B14B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2082900== by 0x18E748: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2082900== by 0x18E5E8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2082900== by 0x18EC7F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2082900== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==2082900== ==2082900== Open file descriptor 116: ==2082900== ==2082900== ==2082900== Open file descriptor 112: ==2082900== ==2082900== ==2082900== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt ==2082900== ==2082900== ==2082900== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2082900== ==2082900== ==2082900== ==2082900== HEAP SUMMARY: ==2082900== in use at exit: 707,111 bytes in 9,491 blocks ==2082900== total heap usage: 864,356 allocs, 854,865 frees, 1,475,998,202 bytes allocated ==2082900== ==2082900== 448 bytes in 8 blocks are definitely lost in loss record 53 of 81 ==2082900== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2082900== by 0x11C70875: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==2082900== by 0x11C6EB0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==2082900== by 0x11C71AB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==2082900== by 0x11C71AD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==2082900== by 0x400647D: call_init.part.0 (dl-init.c:70) ==2082900== by 0x4006567: call_init (dl-init.c:33) ==2082900== by 0x4006567: _dl_init (dl-init.c:117) ==2082900== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==2082900== by 0x3: ??? ==2082900== by 0x1FFF0002EA: ??? ==2082900== by 0x1FFF000361: ??? ==2082900== by 0x1FFF00036F: ??? ==2082900== by 0x1FFF00037C: ??? ==2082900== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==2082900== LEAK SUMMARY: ==2082900== definitely lost: 448 bytes in 8 blocks ==2082900== indirectly lost: 0 bytes in 0 blocks ==2082900== possibly lost: 0 bytes in 0 blocks ==2082900== still reachable: 5,944 bytes in 108 blocks ==2082900== suppressed: 700,719 bytes in 9,375 blocks ==2082900== Reachable blocks (those to which a pointer was found) are not shown. ==2082900== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2082900== ==2082900== For lists of detected and suppressed errors, rerun with: -s ==2082900== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 37 from 37)