==2068669== Memcheck, a memory error detector ==2068669== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2068669== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2068669== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOdeLinearSystemSolver -malloc_debug -malloc_dump -memory_info ==2068669== Parent PID: 2067151 ==2068669== ==2068669== ==2068669== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2068669== Open file descriptor 12: ==2068669== at 0xED3E22D: pipe (pipe.c:29) ==2068669== by 0x1975807D: ??? ==2068669== by 0x14D1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2068669== by 0x111FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2068669== by 0x11196D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2068669== by 0xD736D38: PetscInitialize (pinit.c:924) ==2068669== by 0xD60D15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2068669== by 0xD60D1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2068669== by 0x112010: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2068669== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2068669== by 0x1100A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2068669== by 0x10FFA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2068669== by 0x1105B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2068669== by 0x10C555: main (TestOdeLinearSystemSolver.cpp:18) ==2068669== ==2068669== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2068669== at 0xED42BCC: __open_nocancel (open64_nocancel.c:39) ==2068669== by 0xECC6C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2068669== by 0xE9C0822: ??? ==2068669== by 0xE9C096F: ??? ==2068669== by 0x14DC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2068669== by 0x14DC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2068669== by 0x14D79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2068669== by 0x14D1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2068669== by 0x111FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2068669== by 0x11196D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2068669== by 0xD736D38: PetscInitialize (pinit.c:924) ==2068669== by 0xD60D15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2068669== by 0xD60D1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2068669== by 0x112010: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2068669== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2068669== by 0x1100A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2068669== by 0x10FFA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2068669== by 0x1105B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2068669== by 0x10C555: main (TestOdeLinearSystemSolver.cpp:18) ==2068669== ==2068669== Open file descriptor 116: ==2068669== ==2068669== ==2068669== Open file descriptor 112: ==2068669== ==2068669== ==2068669== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeLinearSystemSolver_valgrind.txt ==2068669== ==2068669== ==2068669== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2068669== ==2068669== ==2068669== ==2068669== HEAP SUMMARY: ==2068669== in use at exit: 706,999 bytes in 9,489 blocks ==2068669== total heap usage: 57,851 allocs, 48,362 frees, 1,354,710,399 bytes allocated ==2068669== ==2068669== 448 bytes in 8 blocks are definitely lost in loss record 51 of 76 ==2068669== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2068669== by 0x1031D875: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==2068669== by 0x1031BB0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==2068669== by 0x1031EAB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==2068669== by 0x1031EAD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==2068669== by 0x400647D: call_init.part.0 (dl-init.c:70) ==2068669== by 0x4006567: call_init (dl-init.c:33) ==2068669== by 0x4006567: _dl_init (dl-init.c:117) ==2068669== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==2068669== by 0x3: ??? ==2068669== by 0x1FFF0002F2: ??? ==2068669== by 0x1FFF000364: ??? ==2068669== by 0x1FFF000372: ??? ==2068669== by 0x1FFF00037F: ??? ==2068669== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==2068669== LEAK SUMMARY: ==2068669== definitely lost: 448 bytes in 8 blocks ==2068669== indirectly lost: 0 bytes in 0 blocks ==2068669== possibly lost: 0 bytes in 0 blocks ==2068669== still reachable: 5,848 bytes in 106 blocks ==2068669== suppressed: 700,703 bytes in 9,375 blocks ==2068669== Reachable blocks (those to which a pointer was found) are not shown. ==2068669== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2068669== ==2068669== For lists of detected and suppressed errors, rerun with: -s ==2068669== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 37 from 37)