==2068708== Memcheck, a memory error detector ==2068708== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2068708== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2068708== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMesh -malloc_debug -malloc_dump -memory_info ==2068708== Parent PID: 2067151 ==2068708== ==2068708== ==2068708== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2068708== Open file descriptor 12: ==2068708== at 0xF5A022D: pipe (pipe.c:29) ==2068708== by 0x1975B07D: ??? ==2068708== by 0x14D0F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2068708== by 0x111FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2068708== by 0x11196D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2068708== by 0xFE8BD38: PetscInitialize (pinit.c:924) ==2068708== by 0xF1AB15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2068708== by 0xF1AB1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2068708== by 0x12E378: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2068708== by 0x129275: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2068708== by 0x12C1D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2068708== by 0x12C078: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2068708== by 0x12C70F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2068708== by 0x1275A5: main (TestPottsMesh.cpp:19) ==2068708== ==2068708== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2068708== at 0xF5A4BCC: __open_nocancel (open64_nocancel.c:39) ==2068708== by 0xF528C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2068708== by 0xF1E0822: ??? ==2068708== by 0xF1E096F: ??? ==2068708== by 0x14DB46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2068708== by 0x14DB4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2068708== by 0x14D6A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2068708== by 0x14D0F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2068708== by 0x111FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2068708== by 0x11196D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2068708== by 0xFE8BD38: PetscInitialize (pinit.c:924) ==2068708== by 0xF1AB15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2068708== by 0xF1AB1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2068708== by 0x12E378: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2068708== by 0x129275: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2068708== by 0x12C1D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2068708== by 0x12C078: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2068708== by 0x12C70F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2068708== by 0x1275A5: main (TestPottsMesh.cpp:19) ==2068708== ==2068708== Open file descriptor 116: ==2068708== ==2068708== ==2068708== Open file descriptor 112: ==2068708== ==2068708== ==2068708== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMesh_valgrind.txt ==2068708== ==2068708== ==2068708== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2068708== ==2068708== ==2068708== ==2068708== HEAP SUMMARY: ==2068708== in use at exit: 706,999 bytes in 9,489 blocks ==2068708== total heap usage: 81,626 allocs, 72,137 frees, 1,355,459,612 bytes allocated ==2068708== ==2068708== 448 bytes in 8 blocks are definitely lost in loss record 51 of 79 ==2068708== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2068708== by 0xE3C8875: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==2068708== by 0xE3C6B0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==2068708== by 0xE3C9AB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==2068708== by 0xE3C9AD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==2068708== by 0x400647D: call_init.part.0 (dl-init.c:70) ==2068708== by 0x4006567: call_init (dl-init.c:33) ==2068708== by 0x4006567: _dl_init (dl-init.c:117) ==2068708== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==2068708== by 0x3: ??? ==2068708== by 0x1FFF00030A: ??? ==2068708== by 0x1FFF000370: ??? ==2068708== by 0x1FFF00037E: ??? ==2068708== by 0x1FFF00038B: ??? ==2068708== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==2068708== LEAK SUMMARY: ==2068708== definitely lost: 448 bytes in 8 blocks ==2068708== indirectly lost: 0 bytes in 0 blocks ==2068708== possibly lost: 0 bytes in 0 blocks ==2068708== still reachable: 5,848 bytes in 106 blocks ==2068708== suppressed: 700,703 bytes in 9,375 blocks ==2068708== Reachable blocks (those to which a pointer was found) are not shown. ==2068708== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2068708== ==2068708== For lists of detected and suppressed errors, rerun with: -s ==2068708== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 37 from 37)