==2082812== Memcheck, a memory error detector ==2082812== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2082812== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2082812== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==2082812== Parent PID: 2067151 ==2082812== ==2082812== ==2082812== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2082812== Open file descriptor 12: ==2082812== at 0xFC3F22D: pipe (pipe.c:29) ==2082812== by 0x1975907D: ??? ==2082812== by 0x14D5C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2082812== by 0x11542418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2082812== by 0x114DBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2082812== by 0x101D0D38: PetscInitialize (pinit.c:924) ==2082812== by 0xF54715B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2082812== by 0xF5471A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2082812== by 0x11BA12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2082812== by 0x117333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2082812== by 0x11961E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2082812== by 0x119519: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2082812== by 0x119B2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2082812== by 0x115B35: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==2082812== ==2082812== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2082812== at 0xFC43BCC: __open_nocancel (open64_nocancel.c:39) ==2082812== by 0xFBC7C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2082812== by 0xF57C822: ??? ==2082812== by 0xF57C96F: ??? ==2082812== by 0x14E016DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2082812== by 0x14E01938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2082812== by 0x14DB7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2082812== by 0x14D5C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2082812== by 0x11542418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2082812== by 0x114DBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2082812== by 0x101D0D38: PetscInitialize (pinit.c:924) ==2082812== by 0xF54715B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2082812== by 0xF5471A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2082812== by 0x11BA12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2082812== by 0x117333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2082812== by 0x11961E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2082812== by 0x119519: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2082812== by 0x119B2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2082812== by 0x115B35: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==2082812== ==2082812== Open file descriptor 116: ==2082812== ==2082812== ==2082812== Open file descriptor 112: ==2082812== ==2082812== ==2082812== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==2082812== ==2082812== ==2082812== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2082812== ==2082812== ==2082812== ==2082812== HEAP SUMMARY: ==2082812== in use at exit: 707,031 bytes in 9,490 blocks ==2082812== total heap usage: 2,086,540 allocs, 2,077,050 frees, 1,689,988,017 bytes allocated ==2082812== ==2082812== 448 bytes in 8 blocks are definitely lost in loss record 52 of 80 ==2082812== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2082812== by 0xE766875: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==2082812== by 0xE764B0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==2082812== by 0xE767AB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==2082812== by 0xE767AD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==2082812== by 0x400647D: call_init.part.0 (dl-init.c:70) ==2082812== by 0x4006567: call_init (dl-init.c:33) ==2082812== by 0x4006567: _dl_init (dl-init.c:117) ==2082812== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==2082812== by 0x3: ??? ==2082812== by 0x1FFF0002CE: ??? ==2082812== by 0x1FFF000353: ??? ==2082812== by 0x1FFF000361: ??? ==2082812== by 0x1FFF00036E: ??? ==2082812== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==2082812== LEAK SUMMARY: ==2082812== definitely lost: 448 bytes in 8 blocks ==2082812== indirectly lost: 0 bytes in 0 blocks ==2082812== possibly lost: 0 bytes in 0 blocks ==2082812== still reachable: 5,880 bytes in 107 blocks ==2082812== suppressed: 700,703 bytes in 9,375 blocks ==2082812== Reachable blocks (those to which a pointer was found) are not shown. ==2082812== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2082812== ==2082812== For lists of detected and suppressed errors, rerun with: -s ==2082812== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 37 from 37)