==2068577== Memcheck, a memory error detector ==2068577== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2068577== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2068577== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithParabolicBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info ==2068577== Parent PID: 2067151 ==2068577== ==2068577== ==2068577== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2068577== Open file descriptor 12: ==2068577== at 0x110F622D: pipe (pipe.c:29) ==2068577== by 0x1975907D: ??? ==2068577== by 0x14CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2068577== by 0x10A00418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2068577== by 0x10999D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2068577== by 0xF670D38: PetscInitialize (pinit.c:924) ==2068577== by 0xF54715B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2068577== by 0xF5471A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2068577== by 0x1284D9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2068577== by 0x123A53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2068577== by 0x125FCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2068577== by 0x125EC5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2068577== by 0x1264D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2068577== by 0x122255: main (TestSimulationsWithParabolicBoxDomainPdeModifier.cpp:18) ==2068577== ==2068577== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2068577== at 0x110FABCC: __open_nocancel (open64_nocancel.c:39) ==2068577== by 0x1107EC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2068577== by 0x108FA822: ??? ==2068577== by 0x108FA96F: ??? ==2068577== by 0x14D636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2068577== by 0x14D63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2068577== by 0x14D19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2068577== by 0x14CBE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2068577== by 0x10A00418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2068577== by 0x10999D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2068577== by 0xF670D38: PetscInitialize (pinit.c:924) ==2068577== by 0xF54715B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2068577== by 0xF5471A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2068577== by 0x1284D9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2068577== by 0x123A53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2068577== by 0x125FCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2068577== by 0x125EC5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2068577== by 0x1264D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2068577== by 0x122255: main (TestSimulationsWithParabolicBoxDomainPdeModifier.cpp:18) ==2068577== ==2068577== Open file descriptor 116: ==2068577== ==2068577== ==2068577== Open file descriptor 112: ==2068577== ==2068577== ==2068577== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt ==2068577== ==2068577== ==2068577== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2068577== ==2068577== ==2068577== ==2068577== HEAP SUMMARY: ==2068577== in use at exit: 706,960 bytes in 9,486 blocks ==2068577== total heap usage: 4,511,214 allocs, 4,501,728 frees, 1,842,232,969 bytes allocated ==2068577== ==2068577== 448 bytes in 8 blocks are definitely lost in loss record 49 of 74 ==2068577== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2068577== by 0xE766875: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==2068577== by 0xE764B0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==2068577== by 0xE767AB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==2068577== by 0xE767AD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==2068577== by 0x400647D: call_init.part.0 (dl-init.c:70) ==2068577== by 0x4006567: call_init (dl-init.c:33) ==2068577== by 0x4006567: _dl_init (dl-init.c:117) ==2068577== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==2068577== by 0x3: ??? ==2068577== by 0x1FFF0002C6: ??? ==2068577== by 0x1FFF00034F: ??? ==2068577== by 0x1FFF00035D: ??? ==2068577== by 0x1FFF00036A: ??? ==2068577== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==2068577== LEAK SUMMARY: ==2068577== definitely lost: 448 bytes in 8 blocks ==2068577== indirectly lost: 0 bytes in 0 blocks ==2068577== possibly lost: 0 bytes in 0 blocks ==2068577== still reachable: 5,880 bytes in 107 blocks ==2068577== suppressed: 700,632 bytes in 9,371 blocks ==2068577== Reachable blocks (those to which a pointer was found) are not shown. ==2068577== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2068577== ==2068577== For lists of detected and suppressed errors, rerun with: -s ==2068577== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 33 from 33)