==2082923== Memcheck, a memory error detector ==2082923== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2082923== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2082923== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSingleOdeWntCellCycleModel -malloc_debug -malloc_dump -memory_info ==2082923== Parent PID: 2067151 ==2082923== ==2082923== ==2082923== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2082923== Open file descriptor 12: ==2082923== at 0x10A2F22D: pipe (pipe.c:29) ==2082923== by 0x1B41A07D: ??? ==2082923== by 0x155694CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2082923== by 0x10339418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2082923== by 0x102D2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2082923== by 0xEFC9D38: PetscInitialize (pinit.c:924) ==2082923== by 0xEE3E15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2082923== by 0xEE3E1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2082923== by 0x18BB69: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2082923== by 0x18416F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2082923== by 0x18747E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2082923== by 0x187379: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2082923== by 0x18798D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2082923== by 0x181D75: main (TestSingleOdeWntCellCycleModel.cpp:18) ==2082923== ==2082923== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2082923== at 0x10A33BCC: __open_nocancel (open64_nocancel.c:39) ==2082923== by 0x109B7C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2082923== by 0xEE73822: ??? ==2082923== by 0xEE7396F: ??? ==2082923== by 0x1560E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2082923== by 0x1560E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2082923== by 0x155C4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2082923== by 0x155692DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2082923== by 0x10339418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2082923== by 0x102D2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2082923== by 0xEFC9D38: PetscInitialize (pinit.c:924) ==2082923== by 0xEE3E15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2082923== by 0xEE3E1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2082923== by 0x18BB69: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2082923== by 0x18416F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2082923== by 0x18747E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2082923== by 0x187379: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2082923== by 0x18798D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2082923== by 0x181D75: main (TestSingleOdeWntCellCycleModel.cpp:18) ==2082923== ==2082923== Open file descriptor 116: ==2082923== ==2082923== ==2082923== Open file descriptor 112: ==2082923== ==2082923== ==2082923== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSingleOdeWntCellCycleModel_valgrind.txt ==2082923== ==2082923== ==2082923== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2082923== ==2082923== ==2082923== ==2082923== HEAP SUMMARY: ==2082923== in use at exit: 707,191 bytes in 9,492 blocks ==2082923== total heap usage: 265,433 allocs, 255,941 frees, 1,372,380,974 bytes allocated ==2082923== ==2082923== 448 bytes in 8 blocks are definitely lost in loss record 54 of 82 ==2082923== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2082923== by 0x11C70875: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==2082923== by 0x11C6EB0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==2082923== by 0x11C71AB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==2082923== by 0x11C71AD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==2082923== by 0x400647D: call_init.part.0 (dl-init.c:70) ==2082923== by 0x4006567: call_init (dl-init.c:33) ==2082923== by 0x4006567: _dl_init (dl-init.c:117) ==2082923== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==2082923== by 0x3: ??? ==2082923== by 0x1FFF0002F2: ??? ==2082923== by 0x1FFF000364: ??? ==2082923== by 0x1FFF000372: ??? ==2082923== by 0x1FFF00037F: ??? ==2082923== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==2082923== LEAK SUMMARY: ==2082923== definitely lost: 448 bytes in 8 blocks ==2082923== indirectly lost: 0 bytes in 0 blocks ==2082923== possibly lost: 0 bytes in 0 blocks ==2082923== still reachable: 6,024 bytes in 109 blocks ==2082923== suppressed: 700,719 bytes in 9,375 blocks ==2082923== Reachable blocks (those to which a pointer was found) are not shown. ==2082923== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2082923== ==2082923== For lists of detected and suppressed errors, rerun with: -s ==2082923== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 37 from 37)