==2068788== Memcheck, a memory error detector ==2068788== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2068788== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2068788== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==2068788== Parent PID: 2067151 ==2068788== ==2068788== ==2068788== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2068788== Open file descriptor 12: ==2068788== at 0xDC2922D: pipe (pipe.c:29) ==2068788== by 0x1975807D: ??? ==2068788== by 0x14D0E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2068788== by 0x111FB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2068788== by 0x11194D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2068788== by 0xFE8BD38: PetscInitialize (pinit.c:924) ==2068788== by 0xD83415B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2068788== by 0xD8341A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2068788== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2068788== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2068788== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2068788== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2068788== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2068788== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==2068788== ==2068788== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2068788== at 0xDC2DBCC: __open_nocancel (open64_nocancel.c:39) ==2068788== by 0xDBB1C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2068788== by 0xD869822: ??? ==2068788== by 0xD86996F: ??? ==2068788== by 0x14DB36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2068788== by 0x14DB3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2068788== by 0x14D69922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2068788== by 0x14D0E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2068788== by 0x111FB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2068788== by 0x11194D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2068788== by 0xFE8BD38: PetscInitialize (pinit.c:924) ==2068788== by 0xD83415B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2068788== by 0xD8341A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2068788== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2068788== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2068788== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2068788== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2068788== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2068788== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==2068788== ==2068788== Open file descriptor 116: ==2068788== ==2068788== ==2068788== Open file descriptor 112: ==2068788== ==2068788== ==2068788== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==2068788== ==2068788== ==2068788== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2068788== ==2068788== ==2068788== ==2068788== HEAP SUMMARY: ==2068788== in use at exit: 706,999 bytes in 9,489 blocks ==2068788== total heap usage: 60,758 allocs, 51,269 frees, 1,354,402,575 bytes allocated ==2068788== ==2068788== 448 bytes in 8 blocks are definitely lost in loss record 51 of 76 ==2068788== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2068788== by 0xEFC5875: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==2068788== by 0xEFC3B0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==2068788== by 0xEFC6AB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==2068788== by 0xEFC6AD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==2068788== by 0x400647D: call_init.part.0 (dl-init.c:70) ==2068788== by 0x4006567: call_init (dl-init.c:33) ==2068788== by 0x4006567: _dl_init (dl-init.c:117) ==2068788== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==2068788== by 0x3: ??? ==2068788== by 0x1FFF0002EE: ??? ==2068788== by 0x1FFF000362: ??? ==2068788== by 0x1FFF000370: ??? ==2068788== by 0x1FFF00037D: ??? ==2068788== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==2068788== LEAK SUMMARY: ==2068788== definitely lost: 448 bytes in 8 blocks ==2068788== indirectly lost: 0 bytes in 0 blocks ==2068788== possibly lost: 0 bytes in 0 blocks ==2068788== still reachable: 5,848 bytes in 106 blocks ==2068788== suppressed: 700,703 bytes in 9,375 blocks ==2068788== Reachable blocks (those to which a pointer was found) are not shown. ==2068788== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2068788== ==2068788== For lists of detected and suppressed errors, rerun with: -s ==2068788== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 37 from 37)