==2119055== Memcheck, a memory error detector ==2119055== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2119055== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2119055== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulationBoundaryCondition -malloc_debug -malloc_dump -memory_info ==2119055== Parent PID: 2103158 ==2119055== ==2119055== ==2119055== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2119055== Open file descriptor 12: ==2119055== at 0x1265C22D: pipe (pipe.c:29) ==2119055== by 0x1B41A07D: ??? ==2119055== by 0x165804CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2119055== by 0x11F66418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2119055== by 0x11EFFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2119055== by 0x10BF6D38: PetscInitialize (pinit.c:924) ==2119055== by 0x10A6B15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2119055== by 0x10A6B1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2119055== by 0x143617: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2119055== by 0x13C4E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2119055== by 0x13F2A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2119055== by 0x13F19F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2119055== by 0x13F7B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2119055== by 0x13ACE5: main (TestCryptSimulationBoundaryCondition.cpp:18) ==2119055== ==2119055== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2119055== at 0x12660BCC: __open_nocancel (open64_nocancel.c:39) ==2119055== by 0x125E4C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2119055== by 0x10AA0822: ??? ==2119055== by 0x10AA096F: ??? ==2119055== by 0x166256DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2119055== by 0x16625938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2119055== by 0x165DB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2119055== by 0x165802DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2119055== by 0x11F66418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2119055== by 0x11EFFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2119055== by 0x10BF6D38: PetscInitialize (pinit.c:924) ==2119055== by 0x10A6B15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2119055== by 0x10A6B1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2119055== by 0x143617: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2119055== by 0x13C4E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2119055== by 0x13F2A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2119055== by 0x13F19F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2119055== by 0x13F7B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2119055== by 0x13ACE5: main (TestCryptSimulationBoundaryCondition.cpp:18) ==2119055== ==2119055== Open file descriptor 116: ==2119055== ==2119055== ==2119055== Open file descriptor 112: ==2119055== ==2119055== ==2119055== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulationBoundaryCondition_valgrind.txt ==2119055== ==2119055== ==2119055== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2119055== ==2119055== ==2119055== ==2119055== HEAP SUMMARY: ==2119055== in use at exit: 707,127 bytes in 9,491 blocks ==2119055== total heap usage: 72,334 allocs, 62,843 frees, 1,358,111,343 bytes allocated ==2119055== ==2119055== 448 bytes in 8 blocks are definitely lost in loss record 53 of 81 ==2119055== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2119055== by 0xFC8A875: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==2119055== by 0xFC88B0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==2119055== by 0xFC8BAB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==2119055== by 0xFC8BAD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==2119055== by 0x400647D: call_init.part.0 (dl-init.c:70) ==2119055== by 0x4006567: call_init (dl-init.c:33) ==2119055== by 0x4006567: _dl_init (dl-init.c:117) ==2119055== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==2119055== by 0x3: ??? ==2119055== by 0x1FFF0002E6: ??? ==2119055== by 0x1FFF00035E: ??? ==2119055== by 0x1FFF00036C: ??? ==2119055== by 0x1FFF000379: ??? ==2119055== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==2119055== LEAK SUMMARY: ==2119055== definitely lost: 448 bytes in 8 blocks ==2119055== indirectly lost: 0 bytes in 0 blocks ==2119055== possibly lost: 0 bytes in 0 blocks ==2119055== still reachable: 5,960 bytes in 108 blocks ==2119055== suppressed: 700,719 bytes in 9,375 blocks ==2119055== Reachable blocks (those to which a pointer was found) are not shown. ==2119055== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2119055== ==2119055== For lists of detected and suppressed errors, rerun with: -s ==2119055== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 37 from 37)