==2103791== Memcheck, a memory error detector ==2103791== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2103791== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2103791== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableVertexMesh -malloc_debug -malloc_dump -memory_info ==2103791== Parent PID: 2103158 ==2103791== ==2103791== ==2103791== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2103791== Open file descriptor 12: ==2103791== at 0x811822D: pipe (pipe.c:29) ==2103791== by 0x1009407D: ??? ==2103791== by 0xB9CB4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2103791== by 0x7A24418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2103791== by 0x79BDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2103791== by 0x66B4D38: PetscInitialize (pinit.c:924) ==2103791== by 0x652715B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2103791== by 0x65271A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2103791== by 0x1B4177: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2103791== by 0x1ADAF5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2103791== by 0x1B192E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2103791== by 0x1B17CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2103791== by 0x1B1E65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2103791== by 0x1ABE25: main (TestMutableVertexMesh.cpp:19) ==2103791== ==2103791== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2103791== at 0x811CBCC: __open_nocancel (open64_nocancel.c:39) ==2103791== by 0x80A0C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2103791== by 0x655C822: ??? ==2103791== by 0x655C96F: ??? ==2103791== by 0xBA706DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2103791== by 0xBA70938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2103791== by 0xBA26922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2103791== by 0xB9CB2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2103791== by 0x7A24418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2103791== by 0x79BDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2103791== by 0x66B4D38: PetscInitialize (pinit.c:924) ==2103791== by 0x652715B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2103791== by 0x65271A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2103791== by 0x1B4177: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2103791== by 0x1ADAF5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2103791== by 0x1B192E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2103791== by 0x1B17CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2103791== by 0x1B1E65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2103791== by 0x1ABE25: main (TestMutableVertexMesh.cpp:19) ==2103791== ==2103791== Open file descriptor 116: ==2103791== ==2103791== ==2103791== Open file descriptor 112: ==2103791== ==2103791== ==2103791== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMesh_valgrind.txt ==2103791== ==2103791== ==2103791== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2103791== ==2103791== ==2103791== ==2103791== HEAP SUMMARY: ==2103791== in use at exit: 709,455 bytes in 9,490 blocks ==2103791== total heap usage: 60,997 allocs, 51,507 frees, 1,354,739,050 bytes allocated ==2103791== ==2103791== 448 bytes in 8 blocks are definitely lost in loss record 52 of 78 ==2103791== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2103791== by 0x5746875: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==2103791== by 0x5744B0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==2103791== by 0x5747AB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==2103791== by 0x5747AD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==2103791== by 0x400647D: call_init.part.0 (dl-init.c:70) ==2103791== by 0x4006567: call_init (dl-init.c:33) ==2103791== by 0x4006567: _dl_init (dl-init.c:117) ==2103791== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==2103791== by 0x3: ??? ==2103791== by 0x1FFF000306: ??? ==2103791== by 0x1FFF00036E: ??? ==2103791== by 0x1FFF00037C: ??? ==2103791== by 0x1FFF000389: ??? ==2103791== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==2103791== LEAK SUMMARY: ==2103791== definitely lost: 448 bytes in 8 blocks ==2103791== indirectly lost: 0 bytes in 0 blocks ==2103791== possibly lost: 0 bytes in 0 blocks ==2103791== still reachable: 8,400 bytes in 107 blocks ==2103791== suppressed: 700,607 bytes in 9,375 blocks ==2103791== Reachable blocks (those to which a pointer was found) are not shown. ==2103791== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2103791== ==2103791== For lists of detected and suppressed errors, rerun with: -s ==2103791== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 35 from 35)