==2121528== Memcheck, a memory error detector ==2121528== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2121528== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2121528== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestSpiralWaveAndPhase -malloc_debug -malloc_dump -memory_info ==2121528== Parent PID: 2103158 ==2121528== ==2121528== ==2121528== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2121528== Open file descriptor 12: ==2121528== at 0x849722D: pipe (pipe.c:29) ==2121528== by 0x104A407D: ??? ==2121528== by 0xC33C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2121528== by 0x8B19418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2121528== by 0x8AB2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2121528== by 0x6A61D38: PetscInitialize (pinit.c:924) ==2121528== by 0x693815B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2121528== by 0x69381A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2121528== by 0x118FE0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2121528== by 0x114793: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2121528== by 0x116F8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2121528== by 0x116E87: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2121528== by 0x11749B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2121528== by 0x112F95: main (TestSpiralWaveAndPhase.cpp:18) ==2121528== ==2121528== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2121528== at 0x849BBCC: __open_nocancel (open64_nocancel.c:39) ==2121528== by 0x841FC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2121528== by 0x7CEB822: ??? ==2121528== by 0x7CEB96F: ??? ==2121528== by 0xC3E16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2121528== by 0xC3E1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2121528== by 0xC397922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2121528== by 0xC33C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2121528== by 0x8B19418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2121528== by 0x8AB2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2121528== by 0x6A61D38: PetscInitialize (pinit.c:924) ==2121528== by 0x693815B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2121528== by 0x69381A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2121528== by 0x118FE0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2121528== by 0x114793: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2121528== by 0x116F8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2121528== by 0x116E87: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2121528== by 0x11749B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2121528== by 0x112F95: main (TestSpiralWaveAndPhase.cpp:18) ==2121528== ==2121528== Open file descriptor 116: ==2121528== ==2121528== ==2121528== Open file descriptor 112: ==2121528== ==2121528== ==2121528== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSpiralWaveAndPhase_valgrind.txt ==2121528== ==2121528== ==2121528== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2121528== ==2121528== ==2121528== ==2121528== HEAP SUMMARY: ==2121528== in use at exit: 707,344 bytes in 9,495 blocks ==2121528== total heap usage: 4,513,904 allocs, 4,504,409 frees, 1,954,348,190 bytes allocated ==2121528== ==2121528== 448 bytes in 8 blocks are definitely lost in loss record 51 of 79 ==2121528== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2121528== by 0x5AE2875: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==2121528== by 0x5AE0B0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==2121528== by 0x5AE3AB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==2121528== by 0x5AE3AD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==2121528== by 0x400647D: call_init.part.0 (dl-init.c:70) ==2121528== by 0x4006567: call_init (dl-init.c:33) ==2121528== by 0x4006567: _dl_init (dl-init.c:117) ==2121528== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==2121528== by 0x3: ??? ==2121528== by 0x1FFF000302: ??? ==2121528== by 0x1FFF00036C: ??? ==2121528== by 0x1FFF00037A: ??? ==2121528== by 0x1FFF000387: ??? ==2121528== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==2121528== LEAK SUMMARY: ==2121528== definitely lost: 448 bytes in 8 blocks ==2121528== indirectly lost: 0 bytes in 0 blocks ==2121528== possibly lost: 0 bytes in 0 blocks ==2121528== still reachable: 5,848 bytes in 106 blocks ==2121528== suppressed: 701,048 bytes in 9,381 blocks ==2121528== Reachable blocks (those to which a pointer was found) are not shown. ==2121528== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2121528== ==2121528== For lists of detected and suppressed errors, rerun with: -s ==2121528== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 36 from 34)