==2336872== Memcheck, a memory error detector ==2336872== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2336872== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2336872== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==2336872== Parent PID: 2318753 ==2336872== ==2336872== Warning: invalid file descriptor -1 in syscall close() ==2336872== ==2336872== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2336872== Open file descriptor 12: ==2336872== at 0xBD5C22D: pipe (pipe.c:29) ==2336872== by 0x13F8507D: ??? ==2336872== by 0xFC464CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2336872== by 0xB64C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2336872== by 0xB5E5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2336872== by 0x9F27D38: PetscInitialize (pinit.c:924) ==2336872== by 0x9D9B0B3: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2336872== by 0x9D9B101: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2336872== by 0x14A6BC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2336872== by 0x141945: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2336872== by 0x144B38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2336872== by 0x1449D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2336872== by 0x14506F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2336872== by 0x13FC25: main (TestMonodomainProblem.cpp:19) ==2336872== ==2336872== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2336872== at 0xBD60BCC: __open_nocancel (open64_nocancel.c:39) ==2336872== by 0xBCE4C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2336872== by 0x9DCF822: ??? ==2336872== by 0x9DCF96F: ??? ==2336872== by 0xFCEB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2336872== by 0xFCEB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2336872== by 0xFCA1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2336872== by 0xFC462DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2336872== by 0xB64C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2336872== by 0xB5E5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2336872== by 0x9F27D38: PetscInitialize (pinit.c:924) ==2336872== by 0x9D9B0B3: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2336872== by 0x9D9B101: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2336872== by 0x14A6BC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2336872== by 0x141945: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2336872== by 0x144B38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2336872== by 0x1449D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2336872== by 0x14506F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2336872== by 0x13FC25: main (TestMonodomainProblem.cpp:19) ==2336872== ==2336872== Open file descriptor 115: ==2336872== ==2336872== ==2336872== Open file descriptor 111: ==2336872== ==2336872== ==2336872== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==2336872== ==2336872== ==2336872== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2336872== ==2336872== ==2336872== ==2336872== HEAP SUMMARY: ==2336872== in use at exit: 701,152 bytes in 9,383 blocks ==2336872== total heap usage: 6,620,327 allocs, 6,610,944 frees, 4,033,890,544 bytes allocated ==2336872== ==2336872== LEAK SUMMARY: ==2336872== definitely lost: 0 bytes in 0 blocks ==2336872== indirectly lost: 0 bytes in 0 blocks ==2336872== possibly lost: 0 bytes in 0 blocks ==2336872== still reachable: 24 bytes in 2 blocks ==2336872== suppressed: 701,128 bytes in 9,381 blocks ==2336872== Reachable blocks (those to which a pointer was found) are not shown. ==2336872== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2336872== ==2336872== For lists of detected and suppressed errors, rerun with: -s ==2336872== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 125 from 31)