==2451369== Memcheck, a memory error detector ==2451369== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2451369== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2451369== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==2451369== Parent PID: 2435613 ==2451369== ==2451369== ==2451369== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2451369== Open file descriptor 12: ==2451369== at 0x1053922D: pipe (pipe.c:29) ==2451369== by 0x1A6C807D: ??? ==2451369== by 0x158C84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2451369== by 0x12195418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2451369== by 0x1212ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2451369== by 0x10E25D38: PetscInitialize (pinit.c:924) ==2451369== by 0xFD170B3: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2451369== by 0xFD17101: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2451369== by 0x23B7C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2451369== by 0x2319C9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2451369== by 0x2360FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2451369== by 0x235F9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2451369== by 0x236631: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2451369== by 0x22FCB5: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==2451369== ==2451369== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2451369== at 0x1053DBCC: __open_nocancel (open64_nocancel.c:39) ==2451369== by 0x104C1C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2451369== by 0xFD4B822: ??? ==2451369== by 0xFD4B96F: ??? ==2451369== by 0x1596D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2451369== by 0x1596D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2451369== by 0x15923922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2451369== by 0x158C82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2451369== by 0x12195418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2451369== by 0x1212ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2451369== by 0x10E25D38: PetscInitialize (pinit.c:924) ==2451369== by 0xFD170B3: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2451369== by 0xFD17101: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2451369== by 0x23B7C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2451369== by 0x2319C9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2451369== by 0x2360FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2451369== by 0x235F9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2451369== by 0x236631: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2451369== by 0x22FCB5: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==2451369== ==2451369== Open file descriptor 115: ==2451369== ==2451369== ==2451369== Open file descriptor 111: ==2451369== ==2451369== ==2451369== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==2451369== ==2451369== ==2451369== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2451369== ==2451369== ==2451369== ==2451369== HEAP SUMMARY: ==2451369== in use at exit: 700,704 bytes in 9,374 blocks ==2451369== total heap usage: 6,309,655 allocs, 6,300,281 frees, 2,072,723,916 bytes allocated ==2451369== ==2451369== LEAK SUMMARY: ==2451369== definitely lost: 0 bytes in 0 blocks ==2451369== indirectly lost: 0 bytes in 0 blocks ==2451369== possibly lost: 0 bytes in 0 blocks ==2451369== still reachable: 56 bytes in 3 blocks ==2451369== suppressed: 700,648 bytes in 9,371 blocks ==2451369== Reachable blocks (those to which a pointer was found) are not shown. ==2451369== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2451369== ==2451369== For lists of detected and suppressed errors, rerun with: -s ==2451369== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)