==2615513== Memcheck, a memory error detector ==2615513== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2615513== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2615513== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info ==2615513== Parent PID: 2613719 ==2615513== ==2615513== ==2615513== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2615513== Open file descriptor 12: ==2615513== at 0xEB4E22D: pipe (pipe.c:29) ==2615513== by 0x18A0707D: ??? ==2615513== by 0x140084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2615513== by 0x107EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2615513== by 0x10787D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2615513== by 0xF47ED38: PetscInitialize (pinit.c:924) ==2615513== by 0xE4570B3: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2615513== by 0xE457101: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2615513== by 0x1221BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2615513== by 0x11D92D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2615513== by 0x11FD1C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2615513== by 0x11FBBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2615513== by 0x120253: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2615513== by 0x11BD55: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==2615513== ==2615513== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2615513== at 0xEB52BCC: __open_nocancel (open64_nocancel.c:39) ==2615513== by 0xEAD6C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2615513== by 0xE48B822: ??? ==2615513== by 0xE48B96F: ??? ==2615513== by 0x140AD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2615513== by 0x140AD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2615513== by 0x14063922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2615513== by 0x140082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2615513== by 0x107EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2615513== by 0x10787D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2615513== by 0xF47ED38: PetscInitialize (pinit.c:924) ==2615513== by 0xE4570B3: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2615513== by 0xE457101: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2615513== by 0x1221BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2615513== by 0x11D92D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2615513== by 0x11FD1C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2615513== by 0x11FBBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2615513== by 0x120253: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2615513== by 0x11BD55: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==2615513== ==2615513== Open file descriptor 116: ==2615513== ==2615513== ==2615513== Open file descriptor 112: ==2615513== ==2615513== ==2615513== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt ==2615513== ==2615513== ==2615513== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2615513== ==2615513== ==2615513== ==2615513== HEAP SUMMARY: ==2615513== in use at exit: 700,759 bytes in 9,378 blocks ==2615513== total heap usage: 1,126,601 allocs, 1,117,223 frees, 1,431,032,179 bytes allocated ==2615513== ==2615513== LEAK SUMMARY: ==2615513== definitely lost: 0 bytes in 0 blocks ==2615513== indirectly lost: 0 bytes in 0 blocks ==2615513== possibly lost: 0 bytes in 0 blocks ==2615513== still reachable: 56 bytes in 3 blocks ==2615513== suppressed: 700,703 bytes in 9,375 blocks ==2615513== Reachable blocks (those to which a pointer was found) are not shown. ==2615513== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2615513== ==2615513== For lists of detected and suppressed errors, rerun with: -s ==2615513== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)