==2692917== Memcheck, a memory error detector ==2692917== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2692917== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2692917== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==2692917== Parent PID: 2691191 ==2692917== ==2692917== ==2692917== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2692917== Open file descriptor 12: ==2692917== at 0xEC2122D: pipe (pipe.c:29) ==2692917== by 0x18A0507D: ??? ==2692917== by 0x140084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2692917== by 0x107EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2692917== by 0x10787D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2692917== by 0xF47CD38: PetscInitialize (pinit.c:924) ==2692917== by 0xE4E60B3: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2692917== by 0xE4E6101: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2692917== by 0x2E25BA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2692917== by 0x2D90B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2692917== by 0x2DD90E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2692917== by 0x2DD7AE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2692917== by 0x2DDE45: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2692917== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) ==2692917== ==2692917== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2692917== at 0xEC25BCC: __open_nocancel (open64_nocancel.c:39) ==2692917== by 0xEBA9C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2692917== by 0xE51A822: ??? ==2692917== by 0xE51A96F: ??? ==2692917== by 0x140AD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2692917== by 0x140AD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2692917== by 0x14063922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2692917== by 0x140082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2692917== by 0x107EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2692917== by 0x10787D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2692917== by 0xF47CD38: PetscInitialize (pinit.c:924) ==2692917== by 0xE4E60B3: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2692917== by 0xE4E6101: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2692917== by 0x2E25BA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2692917== by 0x2D90B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2692917== by 0x2DD90E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2692917== by 0x2DD7AE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2692917== by 0x2DDE45: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2692917== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) ==2692917== ==2692917== Open file descriptor 116: ==2692917== ==2692917== ==2692917== Open file descriptor 112: ==2692917== ==2692917== ==2692917== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulation_valgrind.txt ==2692917== ==2692917== ==2692917== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2692917== ==2692917== ==2692917== ==2692917== HEAP SUMMARY: ==2692917== in use at exit: 700,688 bytes in 9,374 blocks ==2692917== total heap usage: 20,194,384 allocs, 20,185,010 frees, 2,578,023,611 bytes allocated ==2692917== ==2692917== LEAK SUMMARY: ==2692917== definitely lost: 0 bytes in 0 blocks ==2692917== indirectly lost: 0 bytes in 0 blocks ==2692917== possibly lost: 0 bytes in 0 blocks ==2692917== still reachable: 56 bytes in 3 blocks ==2692917== suppressed: 700,632 bytes in 9,371 blocks ==2692917== Reachable blocks (those to which a pointer was found) are not shown. ==2692917== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2692917== ==2692917== For lists of detected and suppressed errors, rerun with: -s ==2692917== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)