==2705998== Memcheck, a memory error detector ==2705998== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2705998== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2705998== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==2705998== Parent PID: 2691191 ==2705998== ==2705998== ==2705998== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2705998== Open file descriptor 12: ==2705998== at 0xEFD422D: pipe (pipe.c:29) ==2705998== by 0x18A0407D: ??? ==2705998== by 0x140074CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2705998== by 0x108D5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2705998== by 0x1086ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2705998== by 0xF565D38: PetscInitialize (pinit.c:924) ==2705998== by 0xE7F40B3: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2705998== by 0xE7F4101: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2705998== by 0x135852: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2705998== by 0x1303E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2705998== by 0x133068: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2705998== by 0x132F08: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2705998== by 0x13359F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2705998== by 0x12E7D5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==2705998== ==2705998== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2705998== at 0xEFD8BCC: __open_nocancel (open64_nocancel.c:39) ==2705998== by 0xEF5CC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2705998== by 0xE828822: ??? ==2705998== by 0xE82896F: ??? ==2705998== by 0x140AC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2705998== by 0x140AC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2705998== by 0x14062922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2705998== by 0x140072DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2705998== by 0x108D5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2705998== by 0x1086ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2705998== by 0xF565D38: PetscInitialize (pinit.c:924) ==2705998== by 0xE7F40B3: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2705998== by 0xE7F4101: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2705998== by 0x135852: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2705998== by 0x1303E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2705998== by 0x133068: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2705998== by 0x132F08: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2705998== by 0x13359F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2705998== by 0x12E7D5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==2705998== ==2705998== Open file descriptor 116: ==2705998== ==2705998== ==2705998== Open file descriptor 112: ==2705998== ==2705998== ==2705998== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt ==2705998== ==2705998== ==2705998== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2705998== ==2705998== ==2705998== ==2705998== HEAP SUMMARY: ==2705998== in use at exit: 700,759 bytes in 9,378 blocks ==2705998== total heap usage: 2,358,541 allocs, 2,349,163 frees, 1,791,525,784 bytes allocated ==2705998== ==2705998== LEAK SUMMARY: ==2705998== definitely lost: 0 bytes in 0 blocks ==2705998== indirectly lost: 0 bytes in 0 blocks ==2705998== possibly lost: 0 bytes in 0 blocks ==2705998== still reachable: 56 bytes in 3 blocks ==2705998== suppressed: 700,703 bytes in 9,375 blocks ==2705998== Reachable blocks (those to which a pointer was found) are not shown. ==2705998== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2705998== ==2705998== For lists of detected and suppressed errors, rerun with: -s ==2705998== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)