==2800697== Memcheck, a memory error detector ==2800697== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2800697== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2800697== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==2800697== Parent PID: 2784933 ==2800697== ==2800697== ==2800697== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2800697== Open file descriptor 12: ==2800697== at 0x1053A22D: pipe (pipe.c:29) ==2800697== by 0x1A6C807D: ??? ==2800697== by 0x158C84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2800697== by 0x12196418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2800697== by 0x1212FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2800697== by 0x10E26D38: PetscInitialize (pinit.c:924) ==2800697== by 0xFD180B3: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2800697== by 0xFD18101: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2800697== by 0x23B3BC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2800697== by 0x2318B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2800697== by 0x235FE2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2800697== by 0x235E82: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2800697== by 0x236519: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2800697== by 0x22FC95: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==2800697== ==2800697== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2800697== at 0x1053EBCC: __open_nocancel (open64_nocancel.c:39) ==2800697== by 0x104C2C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2800697== by 0xFD4C822: ??? ==2800697== by 0xFD4C96F: ??? ==2800697== by 0x1596D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2800697== by 0x1596D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2800697== by 0x15923922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2800697== by 0x158C82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2800697== by 0x12196418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2800697== by 0x1212FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2800697== by 0x10E26D38: PetscInitialize (pinit.c:924) ==2800697== by 0xFD180B3: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2800697== by 0xFD18101: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2800697== by 0x23B3BC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2800697== by 0x2318B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2800697== by 0x235FE2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2800697== by 0x235E82: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2800697== by 0x236519: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2800697== by 0x22FC95: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==2800697== ==2800697== Open file descriptor 116: ==2800697== ==2800697== ==2800697== Open file descriptor 112: ==2800697== ==2800697== ==2800697== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==2800697== ==2800697== ==2800697== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2800697== ==2800697== ==2800697== ==2800697== HEAP SUMMARY: ==2800697== in use at exit: 700,704 bytes in 9,374 blocks ==2800697== total heap usage: 6,309,666 allocs, 6,300,292 frees, 2,072,725,342 bytes allocated ==2800697== ==2800697== LEAK SUMMARY: ==2800697== definitely lost: 0 bytes in 0 blocks ==2800697== indirectly lost: 0 bytes in 0 blocks ==2800697== possibly lost: 0 bytes in 0 blocks ==2800697== still reachable: 56 bytes in 3 blocks ==2800697== suppressed: 700,648 bytes in 9,371 blocks ==2800697== Reachable blocks (those to which a pointer was found) are not shown. ==2800697== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2800697== ==2800697== For lists of detected and suppressed errors, rerun with: -s ==2800697== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)