==2800413== Memcheck, a memory error detector ==2800413== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2800413== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2800413== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==2800413== Parent PID: 2784933 ==2800413== ==2800413== ==2800413== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2800413== Open file descriptor 12: ==2800413== at 0xEEEC22D: pipe (pipe.c:29) ==2800413== by 0x18A0507D: ??? ==2800413== by 0x1400C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2800413== by 0x107EF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2800413== by 0x10788D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2800413== by 0xF47DD38: PetscInitialize (pinit.c:924) ==2800413== by 0xE7F50B3: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2800413== by 0xE7F5101: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2800413== by 0x11BA12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2800413== by 0x117333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2800413== by 0x11961E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2800413== by 0x119519: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2800413== by 0x119B2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2800413== by 0x115B35: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==2800413== ==2800413== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2800413== at 0xEEF0BCC: __open_nocancel (open64_nocancel.c:39) ==2800413== by 0xEE74C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2800413== by 0xE829822: ??? ==2800413== by 0xE82996F: ??? ==2800413== by 0x140B16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2800413== by 0x140B1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2800413== by 0x14067922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2800413== by 0x1400C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2800413== by 0x107EF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2800413== by 0x10788D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2800413== by 0xF47DD38: PetscInitialize (pinit.c:924) ==2800413== by 0xE7F50B3: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2800413== by 0xE7F5101: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2800413== by 0x11BA12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2800413== by 0x117333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2800413== by 0x11961E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2800413== by 0x119519: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2800413== by 0x119B2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2800413== by 0x115B35: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==2800413== ==2800413== Open file descriptor 116: ==2800413== ==2800413== ==2800413== Open file descriptor 112: ==2800413== ==2800413== ==2800413== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==2800413== ==2800413== ==2800413== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2800413== ==2800413== ==2800413== ==2800413== HEAP SUMMARY: ==2800413== in use at exit: 700,759 bytes in 9,378 blocks ==2800413== total heap usage: 2,085,952 allocs, 2,076,574 frees, 1,689,938,888 bytes allocated ==2800413== ==2800413== LEAK SUMMARY: ==2800413== definitely lost: 0 bytes in 0 blocks ==2800413== indirectly lost: 0 bytes in 0 blocks ==2800413== possibly lost: 0 bytes in 0 blocks ==2800413== still reachable: 56 bytes in 3 blocks ==2800413== suppressed: 700,703 bytes in 9,375 blocks ==2800413== Reachable blocks (those to which a pointer was found) are not shown. ==2800413== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2800413== ==2800413== For lists of detected and suppressed errors, rerun with: -s ==2800413== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)