==2913081== Memcheck, a memory error detector ==2913081== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2913081== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2913081== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info ==2913081== Parent PID: 2911187 ==2913081== ==2913081== ==2913081== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2913081== Open file descriptor 12: ==2913081== at 0xF8B122D: pipe (pipe.c:29) ==2913081== by 0x1976707D: ??? ==2913081== by 0x14D704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2913081== by 0x11551418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2913081== by 0x114EAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2913081== by 0x101E1D38: PetscInitialize (pinit.c:924) ==2913081== by 0xF1B923F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2913081== by 0xF1B928D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2913081== by 0x1221BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2913081== by 0x11D92D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2913081== by 0x11FD1C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2913081== by 0x11FBBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2913081== by 0x120253: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2913081== by 0x11BD55: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==2913081== ==2913081== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2913081== at 0xF8B5BCC: __open_nocancel (open64_nocancel.c:39) ==2913081== by 0xF839C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2913081== by 0xF1EE822: ??? ==2913081== by 0xF1EE96F: ??? ==2913081== by 0x14E156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2913081== by 0x14E15938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2913081== by 0x14DCB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2913081== by 0x14D702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2913081== by 0x11551418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2913081== by 0x114EAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2913081== by 0x101E1D38: PetscInitialize (pinit.c:924) ==2913081== by 0xF1B923F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2913081== by 0xF1B928D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2913081== by 0x1221BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2913081== by 0x11D92D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2913081== by 0x11FD1C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2913081== by 0x11FBBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2913081== by 0x120253: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2913081== by 0x11BD55: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==2913081== ==2913081== Open file descriptor 116: ==2913081== ==2913081== ==2913081== Open file descriptor 112: ==2913081== ==2913081== ==2913081== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt ==2913081== ==2913081== ==2913081== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2913081== ==2913081== ==2913081== ==2913081== HEAP SUMMARY: ==2913081== in use at exit: 700,759 bytes in 9,378 blocks ==2913081== total heap usage: 1,127,175 allocs, 1,117,797 frees, 1,431,077,019 bytes allocated ==2913081== ==2913081== LEAK SUMMARY: ==2913081== definitely lost: 0 bytes in 0 blocks ==2913081== indirectly lost: 0 bytes in 0 blocks ==2913081== possibly lost: 0 bytes in 0 blocks ==2913081== still reachable: 56 bytes in 3 blocks ==2913081== suppressed: 700,703 bytes in 9,375 blocks ==2913081== Reachable blocks (those to which a pointer was found) are not shown. ==2913081== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2913081== ==2913081== For lists of detected and suppressed errors, rerun with: -s ==2913081== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)