==2927165== Memcheck, a memory error detector ==2927165== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2927165== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2927165== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==2927165== Parent PID: 2911187 ==2927165== ==2927165== ==2927165== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2927165== Open file descriptor 12: ==2927165== at 0x1266A22D: pipe (pipe.c:29) ==2927165== by 0x1B42907D: ??? ==2927165== by 0x1658B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2927165== by 0x11F74418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2927165== by 0x11F0DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2927165== by 0x10C04D38: PetscInitialize (pinit.c:924) ==2927165== by 0x10A7923F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2927165== by 0x10A7928D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2927165== by 0x224495: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2927165== by 0x21BED1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2927165== by 0x21FAD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2927165== by 0x21F978: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2927165== by 0x22000F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2927165== by 0x21A2B5: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==2927165== ==2927165== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2927165== at 0x1266EBCC: __open_nocancel (open64_nocancel.c:39) ==2927165== by 0x125F2C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2927165== by 0x10AAE822: ??? ==2927165== by 0x10AAE96F: ??? ==2927165== by 0x166326DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2927165== by 0x16632938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2927165== by 0x165E8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2927165== by 0x1658B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2927165== by 0x11F74418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2927165== by 0x11F0DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2927165== by 0x10C04D38: PetscInitialize (pinit.c:924) ==2927165== by 0x10A7923F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2927165== by 0x10A7928D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2927165== by 0x224495: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2927165== by 0x21BED1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2927165== by 0x21FAD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2927165== by 0x21F978: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2927165== by 0x22000F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2927165== by 0x21A2B5: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==2927165== ==2927165== Open file descriptor 116: ==2927165== ==2927165== ==2927165== Open file descriptor 112: ==2927165== ==2927165== ==2927165== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==2927165== ==2927165== ==2927165== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2927165== ==2927165== ==2927165== ==2927165== HEAP SUMMARY: ==2927165== in use at exit: 700,704 bytes in 9,374 blocks ==2927165== total heap usage: 3,720,567 allocs, 3,711,193 frees, 1,636,759,080 bytes allocated ==2927165== ==2927165== LEAK SUMMARY: ==2927165== definitely lost: 0 bytes in 0 blocks ==2927165== indirectly lost: 0 bytes in 0 blocks ==2927165== possibly lost: 0 bytes in 0 blocks ==2927165== still reachable: 56 bytes in 3 blocks ==2927165== suppressed: 700,648 bytes in 9,371 blocks ==2927165== Reachable blocks (those to which a pointer was found) are not shown. ==2927165== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2927165== ==2927165== For lists of detected and suppressed errors, rerun with: -s ==2927165== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)