==2911970== Memcheck, a memory error detector ==2911970== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2911970== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2911970== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryPalisadeMeshGenerator -malloc_debug -malloc_dump -memory_info ==2911970== Parent PID: 2911187 ==2911970== ==2911970== ==2911970== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2911970== Open file descriptor 12: ==2911970== at 0x80E622D: pipe (pipe.c:29) ==2911970== by 0x100A207D: ??? ==2911970== by 0xB9E14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2911970== by 0x79F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2911970== by 0x798BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2911970== by 0x6660D38: PetscInitialize (pinit.c:924) ==2911970== by 0x653723F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2911970== by 0x653728D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2911970== by 0x113B3B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2911970== by 0x10F3ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2911970== by 0x111BB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2911970== by 0x111A58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2911970== by 0x1120EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2911970== by 0x10D815: main (TestImmersedBoundaryPalisadeMeshGenerator.cpp:19) ==2911970== ==2911970== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2911970== at 0x80EABCC: __open_nocancel (open64_nocancel.c:39) ==2911970== by 0x806EC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2911970== by 0x78EA822: ??? ==2911970== by 0x78EA96F: ??? ==2911970== by 0xBA866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2911970== by 0xBA86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2911970== by 0xBA3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2911970== by 0xB9E12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2911970== by 0x79F2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2911970== by 0x798BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2911970== by 0x6660D38: PetscInitialize (pinit.c:924) ==2911970== by 0x653723F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2911970== by 0x653728D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2911970== by 0x113B3B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2911970== by 0x10F3ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2911970== by 0x111BB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2911970== by 0x111A58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2911970== by 0x1120EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2911970== by 0x10D815: main (TestImmersedBoundaryPalisadeMeshGenerator.cpp:19) ==2911970== ==2911970== Open file descriptor 116: ==2911970== ==2911970== ==2911970== Open file descriptor 112: ==2911970== ==2911970== ==2911970== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryPalisadeMeshGenerator_valgrind.txt ==2911970== ==2911970== ==2911970== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2911970== ==2911970== ==2911970== ==2911970== HEAP SUMMARY: ==2911970== in use at exit: 723,895 bytes in 9,546 blocks ==2911970== total heap usage: 57,754 allocs, 48,208 frees, 1,369,048,452 bytes allocated ==2911970== ==2911970== 20,472 (128 direct, 20,344 indirect) bytes in 1 blocks are definitely lost in loss record 66 of 72 ==2911970== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==2911970== by 0x5BB8ABC: ImmersedBoundaryPalisadeMeshGenerator::ImmersedBoundaryPalisadeMeshGenerator(unsigned int, unsigned int, double, double, double, bool, bool, bool, unsigned int, double) (ImmersedBoundaryPalisadeMeshGenerator.cpp:222) ==2911970== by 0x114259: TestImmersedBoundaryPalisadeMeshGenerator::TestCellGenerationExceptions() (TestImmersedBoundaryPalisadeMeshGenerator.hpp:86) ==2911970== by 0x114472: TestDescription_TestImmersedBoundaryPalisadeMeshGenerator_TestCellGenerationExceptions::runTest() (TestImmersedBoundaryPalisadeMeshGenerator.cpp:43) ==2911970== by 0x10EAD1: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==2911970== by 0x111E66: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==2911970== by 0x111D4B: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==2911970== by 0x111BF1: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==2911970== by 0x111A58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2911970== by 0x1120EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2911970== by 0x10D815: main (TestImmersedBoundaryPalisadeMeshGenerator.cpp:19) ==2911970== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN37ImmersedBoundaryPalisadeMeshGeneratorC1Ejjdddbbbjd fun:_ZN41TestImmersedBoundaryPalisadeMeshGenerator28TestCellGenerationExceptionsEv fun:_ZN86TestDescription_TestImmersedBoundaryPalisadeMeshGenerator_TestCellGenerationExceptions7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==2911970== LEAK SUMMARY: ==2911970== definitely lost: 128 bytes in 1 blocks ==2911970== indirectly lost: 20,344 bytes in 165 blocks ==2911970== possibly lost: 0 bytes in 0 blocks ==2911970== still reachable: 2,816 bytes in 5 blocks ==2911970== suppressed: 700,607 bytes in 9,375 blocks ==2911970== Reachable blocks (those to which a pointer was found) are not shown. ==2911970== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2911970== ==2911970== For lists of detected and suppressed errors, rerun with: -s ==2911970== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 37 from 37)