==2913997== Memcheck, a memory error detector ==2913997== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2913997== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2913997== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==2913997== Parent PID: 2911187 ==2913997== ==2913997== ==2913997== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2913997== Open file descriptor 12: ==2913997== at 0xFE5822D: pipe (pipe.c:29) ==2913997== by 0x1976807D: ??? ==2913997== by 0x14E8F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2913997== by 0x11AB4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2913997== by 0x11A4DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2913997== by 0x10744D38: PetscInitialize (pinit.c:924) ==2913997== by 0xF1B923F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2913997== by 0xF1B928D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2913997== by 0x1D34BA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2913997== by 0x1CCE51: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2913997== by 0x1D05EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2913997== by 0x1D048C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2913997== by 0x1D0B23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2913997== by 0x1CB235: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==2913997== ==2913997== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2913997== at 0xFE5CBCC: __open_nocancel (open64_nocancel.c:39) ==2913997== by 0xFDE0C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2913997== by 0xF1EE822: ??? ==2913997== by 0xF1EE96F: ??? ==2913997== by 0x14F346DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2913997== by 0x14F34938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2913997== by 0x14EEA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2913997== by 0x14E8F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2913997== by 0x11AB4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2913997== by 0x11A4DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2913997== by 0x10744D38: PetscInitialize (pinit.c:924) ==2913997== by 0xF1B923F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2913997== by 0xF1B928D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2913997== by 0x1D34BA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2913997== by 0x1CCE51: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2913997== by 0x1D05EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2913997== by 0x1D048C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2913997== by 0x1D0B23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2913997== by 0x1CB235: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==2913997== ==2913997== Open file descriptor 116: ==2913997== ==2913997== ==2913997== Open file descriptor 112: ==2913997== ==2913997== ==2913997== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==2913997== ==2913997== ==2913997== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2913997== ==2913997== ==2913997== ==2913997== HEAP SUMMARY: ==2913997== in use at exit: 700,688 bytes in 9,374 blocks ==2913997== total heap usage: 7,097,923 allocs, 7,088,549 frees, 8,099,053,442 bytes allocated ==2913997== ==2913997== LEAK SUMMARY: ==2913997== definitely lost: 0 bytes in 0 blocks ==2913997== indirectly lost: 0 bytes in 0 blocks ==2913997== possibly lost: 0 bytes in 0 blocks ==2913997== still reachable: 56 bytes in 3 blocks ==2913997== suppressed: 700,632 bytes in 9,371 blocks ==2913997== Reachable blocks (those to which a pointer was found) are not shown. ==2913997== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2913997== ==2913997== For lists of detected and suppressed errors, rerun with: -s ==2913997== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)