==79534== Memcheck, a memory error detector ==79534== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==79534== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==79534== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==79534== Parent PID: 77187 ==79534== ==79534== ==79534== FILE DESCRIPTORS: 9 open (3 std) at exit. ==79534== Open file descriptor 12: ==79534== at 0xF99822D: pipe (pipe.c:29) ==79534== by 0x1976707D: ??? ==79534== by 0x14D704CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==79534== by 0x11638418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==79534== by 0x115D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==79534== by 0x102C8D38: PetscInitialize (pinit.c:924) ==79534== by 0xF1B923F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==79534== by 0xF1B928D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==79534== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==79534== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==79534== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==79534== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==79534== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==79534== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==79534== ==79534== Open file descriptor 8: /dev/shm/open_mpi.0000 ==79534== at 0xF99CBCC: __open_nocancel (open64_nocancel.c:39) ==79534== by 0xF920C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==79534== by 0xF1EE822: ??? ==79534== by 0xF1EE96F: ??? ==79534== by 0x14E156DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==79534== by 0x14E15938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==79534== by 0x14DCB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==79534== by 0x14D702DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==79534== by 0x11638418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==79534== by 0x115D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==79534== by 0x102C8D38: PetscInitialize (pinit.c:924) ==79534== by 0xF1B923F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==79534== by 0xF1B928D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==79534== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==79534== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==79534== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==79534== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==79534== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==79534== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==79534== ==79534== Open file descriptor 112: ==79534== ==79534== ==79534== Open file descriptor 109: ==79534== ==79534== ==79534== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==79534== ==79534== ==79534== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==79534== ==79534== ==79534== ==79534== HEAP SUMMARY: ==79534== in use at exit: 700,684 bytes in 9,374 blocks ==79534== total heap usage: 6,678,703 allocs, 6,669,329 frees, 9,011,204,177 bytes allocated ==79534== ==79534== LEAK SUMMARY: ==79534== definitely lost: 0 bytes in 0 blocks ==79534== indirectly lost: 0 bytes in 0 blocks ==79534== possibly lost: 0 bytes in 0 blocks ==79534== still reachable: 56 bytes in 3 blocks ==79534== suppressed: 700,628 bytes in 9,371 blocks ==79534== Reachable blocks (those to which a pointer was found) are not shown. ==79534== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==79534== ==79534== For lists of detected and suppressed errors, rerun with: -s ==79534== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)