==78828== Memcheck, a memory error detector ==78828== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==78828== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==78828== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==78828== Parent PID: 77187 ==78828== ==78828== ==78828== FILE DESCRIPTORS: 9 open (3 std) at exit. ==78828== Open file descriptor 12: ==78828== at 0xDC2722D: pipe (pipe.c:29) ==78828== by 0x1976707D: ??? ==78828== by 0x14D1D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==78828== by 0x1120A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==78828== by 0x111A3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==78828== by 0xFE9AD38: PetscInitialize (pinit.c:924) ==78828== by 0xD83223F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==78828== by 0xD83228D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==78828== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==78828== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==78828== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==78828== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==78828== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==78828== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==78828== ==78828== Open file descriptor 8: /dev/shm/open_mpi.0000 ==78828== at 0xDC2BBCC: __open_nocancel (open64_nocancel.c:39) ==78828== by 0xDBAFC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==78828== by 0xD867822: ??? ==78828== by 0xD86796F: ??? ==78828== by 0x14DC26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==78828== by 0x14DC2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==78828== by 0x14D78922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==78828== by 0x14D1D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==78828== by 0x1120A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==78828== by 0x111A3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==78828== by 0xFE9AD38: PetscInitialize (pinit.c:924) ==78828== by 0xD83223F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==78828== by 0xD83228D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==78828== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==78828== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==78828== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==78828== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==78828== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==78828== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==78828== ==78828== Open file descriptor 112: ==78828== ==78828== ==78828== Open file descriptor 109: ==78828== ==78828== ==78828== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==78828== ==78828== ==78828== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==78828== ==78828== ==78828== ==78828== HEAP SUMMARY: ==78828== in use at exit: 700,717 bytes in 9,377 blocks ==78828== total heap usage: 60,738 allocs, 51,361 frees, 1,354,391,311 bytes allocated ==78828== ==78828== LEAK SUMMARY: ==78828== definitely lost: 0 bytes in 0 blocks ==78828== indirectly lost: 0 bytes in 0 blocks ==78828== possibly lost: 0 bytes in 0 blocks ==78828== still reachable: 24 bytes in 2 blocks ==78828== suppressed: 700,693 bytes in 9,375 blocks ==78828== Reachable blocks (those to which a pointer was found) are not shown. ==78828== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==78828== ==78828== For lists of detected and suppressed errors, rerun with: -s ==78828== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)