==500849== Memcheck, a memory error detector ==500849== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==500849== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==500849== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDeltaNotchSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==500849== Parent PID: 485460 ==500849== ==500849== ==500849== FILE DESCRIPTORS: 9 open (3 std) at exit. ==500849== Open file descriptor 12: ==500849== at 0xEB4E22D: pipe (pipe.c:29) ==500849== by 0x18A0707D: ??? ==500849== by 0x140084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==500849== by 0x107EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==500849== by 0x10787D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==500849== by 0xF47ED38: PetscInitialize (pinit.c:924) ==500849== by 0xE455153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==500849== by 0xE4551A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==500849== by 0x121CE8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==500849== by 0x11D553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==500849== by 0x11F870: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==500849== by 0x11F76B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==500849== by 0x11FD7F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==500849== by 0x11BD55: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==500849== ==500849== Open file descriptor 8: /dev/shm/open_mpi.0000 ==500849== at 0xEB52BCC: __open_nocancel (open64_nocancel.c:39) ==500849== by 0xEAD6C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==500849== by 0xE489822: ??? ==500849== by 0xE48996F: ??? ==500849== by 0x140AD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==500849== by 0x140AD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==500849== by 0x14063922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==500849== by 0x140082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==500849== by 0x107EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==500849== by 0x10787D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==500849== by 0xF47ED38: PetscInitialize (pinit.c:924) ==500849== by 0xE455153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==500849== by 0xE4551A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==500849== by 0x121CE8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==500849== by 0x11D553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==500849== by 0x11F870: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==500849== by 0x11F76B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==500849== by 0x11FD7F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==500849== by 0x11BD55: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==500849== ==500849== Open file descriptor 116: ==500849== ==500849== ==500849== Open file descriptor 112: ==500849== ==500849== ==500849== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt ==500849== ==500849== ==500849== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==500849== ==500849== ==500849== ==500849== HEAP SUMMARY: ==500849== in use at exit: 700,686 bytes in 9,374 blocks ==500849== total heap usage: 5,178,726 allocs, 5,169,352 frees, 1,793,363,696 bytes allocated ==500849== ==500849== LEAK SUMMARY: ==500849== definitely lost: 0 bytes in 0 blocks ==500849== indirectly lost: 0 bytes in 0 blocks ==500849== possibly lost: 0 bytes in 0 blocks ==500849== still reachable: 56 bytes in 3 blocks ==500849== suppressed: 700,630 bytes in 9,371 blocks ==500849== Reachable blocks (those to which a pointer was found) are not shown. ==500849== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==500849== ==500849== For lists of detected and suppressed errors, rerun with: -s ==500849== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)